Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20501
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34229| Best HMM Match : PBX (HMM E-Value=0)                         29   4.4  
SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_53543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)            28   7.7  

>SB_34229| Best HMM Match : PBX (HMM E-Value=0)
          Length = 313

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 54  ESICGYPVEGGNGPG 98
           +S CG+P+ GG+GPG
Sbjct: 182 QSTCGFPMGGGSGPG 196


>SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 109 SPTKPGPLPPSTGYPQID 56
           SPT P PLPP + +P I+
Sbjct: 432 SPTTPPPLPPRSSHPSIE 449


>SB_53543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 324 GNVALPRSFHL*YYKRRRVGGVGDLVSHLVQ 232
           GNV+ P  + L YY  RR+   GDL + +V+
Sbjct: 58  GNVSRPNDYQLHYYNTRRLN--GDLANFMVK 86


>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
          Length = 496

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 117 LYGVPQNPVRYPPRPGIRKSIPQR 46
           L+  PQ+P+RYPP P     +P R
Sbjct: 310 LHRYPQSPLRYPPSPIRYPPLPSR 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,734,788
Number of Sequences: 59808
Number of extensions: 330948
Number of successful extensions: 748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)