Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20501
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039039-3|AAB94175.3|  161|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z47072-3|CAI79221.1|  126|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF039039-3|AAB94175.3|  161|Caenorhabditis elegans Hypothetical
           protein T08B1.4 protein.
          Length = 161

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 61  FADTRSRGVTDRVLWDSIQN*VNFYAIGNVERVGLSTHLI 180
           F  TRS+       W S+   ++F+ +G V R  L+ HL+
Sbjct: 92  FRGTRSKSQLFLEGWQSVGTGIDFFDMGEVNRYFLNAHLV 131


>Z47072-3|CAI79221.1|  126|Caenorhabditis elegans Hypothetical
          protein F26C11.4 protein.
          Length = 126

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 24 YSLVAFFNAGESICGYPVEGGN 89
          +S + F   G+S CGYPV+  N
Sbjct: 12 FSSLVFMTNGQSCCGYPVDAIN 33


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 196 RS*TVDCTHVLHLYEMRN*IADSAHSAPFVISKMKGSRQCNITL*KRVSLCQL 354
           R    DC+   +  ++RN +  SA  A F+++   G+      L K+++L QL
Sbjct: 68  RDANTDCSFNANKNQLRNFLTSSAEDANFILTTYSGTSTKTEPLTKQLALDQL 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,101,954
Number of Sequences: 27780
Number of extensions: 243762
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)