Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20477
         (404 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.65 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   2.0  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   2.6  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   4.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 0.65
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 247 FYLVVHHQSGCYEIQHRLHVLFFCLHQIFFQHHL 146
           F L ++H   C  I   +H+LF C   IFF  HL
Sbjct: 162 FLLCIYHFF-CAFIIFTMHLLFCCAF-IFFNMHL 193



 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 196 LHVLFFCLHQIFFQHHL 146
           +H+LF+C   IF  H L
Sbjct: 81  VHLLFYCPFIIFTVHFL 97



 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 217 CYEIQHRLHVLFFCLHQIFFQHHL 146
           C    + +H+LF C   IF  H L
Sbjct: 257 CIYYFYYMHLLFCCAFIIFTMHLL 280


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = +2

Query: 128 TKRQGLEVVLEENLMQTKEQDVEAVLDFVATALVVYNEVEIVGHNEIYQLFEGNSNN 298
           ++R+G    ++   ++++E+D E       T+  V++ VE+V      +  + N+NN
Sbjct: 416 SRRKGPAFKVDPTQVESEEEDEE-------TSTTVFSNVEVVQEEAKKEESDSNNNN 465


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -3

Query: 147 SNPCLFVGFYNIIQCHFNLINH 82
           ++ C++     II+  F+ +NH
Sbjct: 182 TSTCIYTNLLRIIEADFSKLNH 203


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 190 RGGGAGFRSNRSGGVQRGR 246
           +GGGAG  ++ S   Q G+
Sbjct: 119 KGGGAGAAASGSAAAQAGQ 137


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,926
Number of Sequences: 336
Number of extensions: 2098
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)