Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20477
(404 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0) 40 6e-04
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14) 33 0.12
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 32 0.15
SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.47
SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.62
SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05) 30 0.62
SB_4609| Best HMM Match : EGF (HMM E-Value=8.9e-07) 29 1.1
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 29 1.9
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41) 28 2.5
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 28 3.3
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28) 28 3.3
SB_41445| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 27 4.4
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014) 27 4.4
SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 27 5.8
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_23149| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_33106| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_23752| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9) 27 7.7
>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 41.9 bits (94), Expect = 2e-04
Identities = 26/56 (46%), Positives = 30/56 (53%)
Frame = +1
Query: 88 DQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
DQ++M+LDDIIK NKK+ GG GRGG G G V RGR RG
Sbjct: 140 DQLDMSLDDIIKQNKKSSRGG-----------RGRGGSRGPGRRGGGPVGRGRTRG 184
>SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0)
Length = 304
Score = 40.3 bits (90), Expect = 6e-04
Identities = 22/47 (46%), Positives = 25/47 (53%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA*RNLPTIRG 285
GGG G + GRGGG GF+S R GG RG RG R + RG
Sbjct: 45 GGGRGGPRGGGRGGGRGGGGGFKSPRGGG--RGGGRGGGRGVFIARG 89
>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 32.7 bits (71), Expect = 0.12
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
GGG GR GRGG G R GG RGR G
Sbjct: 150 GGGRGRGGGEGGWGGRGGNGGGRGGGEGGGGRGRGTG 186
Score = 31.5 bits (68), Expect = 0.27
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA*RNLPTIRG 285
GG G + GRG G G S GG RGR RG I G
Sbjct: 166 GGNGGGRGGGEGGGGRGRGTGGGSRGGGGDGRGRGRGGTEERTRIEG 212
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
G G G A GRGGG G G RG N G
Sbjct: 134 GRGGGEGNGAGGGIGRGGGRGRGGGEGGWGGRGGNGG 170
>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
Length = 221
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +1
Query: 187 GRGGGAGFRSNRSGGVQRGRNRG 255
GRGG AGFR GG+ RG RG
Sbjct: 129 GRGGAAGFRGRGRGGMTRGGPRG 151
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 32.3 bits (70), Expect = 0.15
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 118 IKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSN---RSGGVQRGRNRG 255
+K + ++ GG GR+ GRGGG G+RS R GG RG G
Sbjct: 113 LKVAEASKDSGGGGRR-GGGYGGGRGGGGGYRSGGGYRGGGGYRGGGGG 160
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRG--GGAGFRSNRSGGVQRGRNRG 255
G G GR R+G G GG G+R GG RGR RG
Sbjct: 131 GYGGGRGGGGGYRSGGGYRGGGGYRGG--GGGYRGRGRG 167
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = +1
Query: 145 GGGAGRKFDANKRTG---RGGGAGFRSNRSGG 231
GGG G + R G RGGG G+R GG
Sbjct: 137 GGGGGYRSGGGYRGGGGYRGGGGGYRGRGRGG 168
>SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 685
Score = 30.7 bits (66), Expect = 0.47
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +1
Query: 97 EMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGG 231
+ LD+ + A ++R GGAGR F N+ GRG R NRS G
Sbjct: 197 QQELDNALLA--RSRQNGGAGRGF--NRTRGRGANHFNRGNRSSG 237
>SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 30.3 bits (65), Expect = 0.62
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSG-GVQRGRNRGA*R 264
GGG R G G G G R R G G RGR RG+ R
Sbjct: 18 GGGGDRGRGRGHCLGHGSGRGGRGGRGGSGRGRGRGRGSGR 58
>SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)
Length = 267
Score = 30.3 bits (65), Expect = 0.62
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +1
Query: 130 KKTRIG-GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
KKTR GG G F G GGG GF GG G G
Sbjct: 74 KKTRASVGGRGGGFGGGGGFGGGGGGGFGGGGGGGFGGGGGGG 116
>SB_4609| Best HMM Match : EGF (HMM E-Value=8.9e-07)
Length = 287
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG 243
GG GR+F +N G GGG G GG G
Sbjct: 246 GGVGGRQFSSNSYGGFGGGGGACGCNGGGAGGG 278
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
GGG G+ + GRG G G+ GG RG+ RG
Sbjct: 242 GGGMGQ---GPRGWGRGSGGGWGQGPGGGWGRGQGRG 275
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
GGG GR GRG G G+ + GG+ RG +G
Sbjct: 328 GGGMGR--GPGGGLGRGPGGGWGRMQGGGMGRGPGQG 362
>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1016
Score = 28.7 bits (61), Expect = 1.9
Identities = 20/55 (36%), Positives = 25/55 (45%)
Frame = +1
Query: 121 KANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA*RNLPTIRG 285
K N + G G G + + TG GGGA R+G GR GA RN + G
Sbjct: 367 KENGDSATGNGDGVTGNGDGVTGSGGGA----TRNGDGFTGREGGATRNADGVTG 417
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA 258
GG +G F ++ G GG +G + G ++G RG+
Sbjct: 369 GGSSGGGFGSSMTNGFGGASGLTNGDDSGRRKGFGRGS 406
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +1
Query: 178 KRTGRGGGAGFRSNRSGGVQRGRNRGA*RNLPTIRG 285
+R GRGGG R G Q G G+ R L T RG
Sbjct: 1254 QRGGRGGGGDSRGGAMYGRQGGYGGGSRRTLGTRRG 1289
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +1
Query: 130 KKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG 243
KK R G G G GR GG G S R+ G +RG
Sbjct: 1252 KKQRGGRGGGGDSRGGAMYGRQGGYGGGSRRTLGTRRG 1289
>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
Length = 487
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 148 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
GG G +FDA+ G GG G GG G G
Sbjct: 243 GGDGGRFDASNMGGATGGTGNMFGGVGGTAAGGQTG 278
>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 151 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
G+ F + GRGG G R GG +RG+ RG
Sbjct: 420 GSNDGFTQMRGGGRGGFRGNRGGFRGGNERGQRRG 454
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
GGG GR GRG G G+ + GG+ RG +G
Sbjct: 69 GGGMGR--GPGGGLGRGPGGGWGRMQEGGMGRGPGQG 103
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
GGG GR GRG G G+ + GG+ RG G
Sbjct: 29 GGGMGR--GPGGGWGRGSGGGWGRMQGGGMGRGPGGG 63
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +1
Query: 121 KANKKTRIGGGAGRKFDANKRTG----RGGGAGFRSNRSGGVQRGRNRGA 258
+A + + GGG G + + G RGGG G+ R GG +R G+
Sbjct: 304 QARSREQRGGGRGGGYRSGGGGGYGGGRGGGRGYGGGRGGGGRRDYGGGS 353
Score = 27.1 bits (57), Expect = 5.8
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +1
Query: 106 LDDIIKANKKTRIGGGAGRKFDANKRTGRGG--GAGFRSNRSGGVQRGRNRG 255
++D I G + + A R RGG G G+RS GG GR G
Sbjct: 283 MEDAINELDGQEFDGRSMKVNQARSREQRGGGRGGGYRSGGGGGYGGGRGGG 334
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNR 252
GGG G GRGGG G+ R GG G R
Sbjct: 105 GGGYGGSSRGGYGGGRGGG-GYGGGRGGGGSYGGGR 139
>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
Length = 711
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 187 GRGGGAGFRSNRSGGVQRGRNRGA*RNLPTI 279
GRG G R R GG RGR RG + P +
Sbjct: 28 GRGSNRGGRGGRGGG--RGRGRGGRQRSPRV 56
>SB_41445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -2
Query: 301 LIIGITLE*LVDFVMPHDFYLVVHHQSGCYEIQHR 197
+++GI + L D V+P ++++H Y+ +HR
Sbjct: 181 IVLGIRSDLLFDHVIPIKHHVIIHLSRSYYKQEHR 215
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 178 KRTGRGGGAGFRSNRSGGVQRGRNRGA*RNLPTIR 282
+R G GGG G GG + GR RG T R
Sbjct: 511 RRRGGGGGGGGGGGGGGGGRGGRGRGRPTTTTTTR 545
>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
Length = 475
Score = 27.5 bits (58), Expect = 4.4
Identities = 19/44 (43%), Positives = 21/44 (47%)
Frame = +1
Query: 124 ANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
A +R G G GR GRG G G S+R G RGR RG
Sbjct: 345 AKSPSRRGRGRGR--------GRGRGRGRGSSRGRGRGRGRGRG 380
>SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 253 HDFYLVVHHQSGCYEIQHR-LHVLFFCLHQIF 161
H + +H C + H LHVL+ CLH ++
Sbjct: 139 HVLHACLHVLYACLHVLHACLHVLYACLHVLY 170
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSG 228
GGG G GRGGG GF S G
Sbjct: 345 GGGGGGGGGGGGGGGRGGGGGFSSRGRG 372
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 27.1 bits (57), Expect = 5.8
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Frame = +1
Query: 97 EMALDDIIKANKKTRIGGGAGRKFDANKRTG-------RGGGAGFRSNRSGGVQRGRNRG 255
EM D + + K RI G+ + A K G GGG G + GG G ++G
Sbjct: 171 EMENDGTVDVDLKIRINPGSAKALCAAKCEGSTDEKKKEGGGGGEEGAKEGGESEGGDKG 230
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +1
Query: 181 RTGRGGG--AGFRSNRSGGVQRGRNRG 255
R G GGG G+R GG + GR+RG
Sbjct: 139 RDGGGGGYRGGYRGGYRGGYRGGRDRG 165
>SB_23149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGG 231
GGG D++ G GGG G S +GG
Sbjct: 291 GGGGDSTTDSDDGAGGGGGGGHFSGGAGG 319
>SB_33106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 278 FEGNSNN*MILKLQMAGKCDASMYLICSQKV 370
FEG + +LQ+ G CDAS +L +++
Sbjct: 351 FEGEDELTALQELQVGGSCDASTFLSNEEEI 381
>SB_23752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 125 PTKRQGLEVVLEENLMQTKEQDVEA 199
PTK QGL VLE L+ QD A
Sbjct: 275 PTKEQGLSSVLENELLALGLQDAPA 299
>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 160 RKFDANKRTGRGGGAGFRSNRSGGVQRG 243
++ +AN+R RG GFR +++ G QRG
Sbjct: 417 KELEANERGARGPKGGFRGDKA-GQQRG 443
>SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)
Length = 907
Score = 26.6 bits (56), Expect = 7.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 232 HHQSGCYEIQHRLHV 188
HH G Y+IQH +H+
Sbjct: 207 HHTRGTYQIQHDIHI 221
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,208,520
Number of Sequences: 59808
Number of extensions: 236779
Number of successful extensions: 944
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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