Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20477
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.00 
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   9.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    20   9.3  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.00
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 168 KFSSSTTSNPCL 133
           KF  S TSNPCL
Sbjct: 97  KFECSKTSNPCL 108


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/48 (20%), Positives = 22/48 (45%)
 Frame = +2

Query: 101 WHWMIL*KPTKRQGLEVVLEENLMQTKEQDVEAVLDFVATALVVYNEV 244
           W+W  L +P    G    L+ ++ + +EQ    +       +V +N++
Sbjct: 26  WNWNTLLRPNFLDGWYQTLQTHMKKVREQMAGILSRIPEQGVVNWNKI 73


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 171  IKFSSSTTSNPCLFVGFYNII 109
            IKF   TTS P +FV    I+
Sbjct: 1517 IKFVPGTTSQPEVFVNGEKIV 1537


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 38  LNFHRKNI*NFK*SPWLIKLKWHWM 112
           LN+H +N    + S W+  +  +W+
Sbjct: 316 LNYHHRNADTHEMSEWVKVVFLYWL 340


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 187 GRGGGAGFRSNRSGGVQRGR 246
           G+G G G   +R  G  RGR
Sbjct: 81  GKGRGHGKGGSRGRGGNRGR 100


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 177 VCIKFSSSTTSNPCLFVGFYNIIQCHFNLINHGD 76
           V  +F S   ++ C+     ++  CH N + H D
Sbjct: 1   VAREFYSEADASHCIQQILESVHHCHHNGVVHRD 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,741
Number of Sequences: 438
Number of extensions: 2461
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)