Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20477
(404 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 37 0.006
At5g62440.1 68418.m07837 expressed protein 32 0.17
At1g27090.1 68414.m03302 glycine-rich protein 31 0.22
At4g23910.1 68417.m03439 expressed protein various predicted pro... 31 0.29
At1g77030.1 68414.m08970 glycine-rich protein 31 0.29
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 31 0.29
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 30 0.51
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 30 0.51
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 30 0.51
At3g04640.1 68416.m00497 glycine-rich protein predicted proteins... 30 0.51
At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7) ide... 29 0.89
At4g01985.1 68417.m00265 expressed protein 29 0.89
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 29 0.89
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 29 0.89
At5g45720.1 68418.m05621 hypothetical protein 29 1.2
At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear... 29 1.2
At1g07135.1 68414.m00759 glycine-rich protein 29 1.2
At1g04800.1 68414.m00476 glycine-rich protein 29 1.2
At4g30460.1 68417.m04325 glycine-rich protein 29 1.6
At2g28670.1 68415.m03485 disease resistance-responsive family pr... 29 1.6
At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi do... 29 1.6
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 28 2.1
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden... 28 2.1
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 28 2.1
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 28 2.7
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 28 2.7
At3g26400.1 68416.m03292 eukaryotic translation initiation facto... 28 2.7
At1g72080.1 68414.m08332 hypothetical protein 28 2.7
At1g55250.1 68414.m06310 expressed protein weak similarity to PU... 28 2.7
At1g19870.1 68414.m02492 calmodulin-binding family protein conta... 28 2.7
At3g06130.1 68416.m00704 heavy-metal-associated domain-containin... 27 3.6
At4g29030.1 68417.m04151 glycine-rich protein glycine-rich prote... 27 4.8
At4g25890.1 68417.m03723 60S acidic ribosomal protein P3 (RPP3A)... 27 4.8
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 27 4.8
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 27 4.8
At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protei... 27 4.8
At1g36675.1 68414.m04563 glycine-rich protein 27 4.8
At1g29030.1 68414.m03553 apoptosis inhibitory 5 (API5) family pr... 27 4.8
At5g64360.3 68418.m08085 DNAJ heat shock N-terminal domain-conta... 27 6.3
At5g64360.2 68418.m08084 DNAJ heat shock N-terminal domain-conta... 27 6.3
At3g56990.1 68416.m06344 glycine-rich protein conserved hypothet... 27 6.3
At3g44850.1 68416.m04832 protein kinase-related contains eukaryo... 27 6.3
At1g36940.1 68414.m04604 hypothetical protein 27 6.3
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 26 8.3
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 26 8.3
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 26 8.3
At5g46730.1 68418.m05757 glycine-rich protein 26 8.3
At5g15610.2 68418.m01827 proteasome family protein contains Pfam... 26 8.3
At5g15610.1 68418.m01826 proteasome family protein contains Pfam... 26 8.3
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 26 8.3
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 26 8.3
At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam ... 26 8.3
At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam ... 26 8.3
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 26 8.3
At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein... 26 8.3
At1g72180.1 68414.m08346 leucine-rich repeat transmembrane prote... 26 8.3
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 36.7 bits (81), Expect = 0.006
Identities = 24/63 (38%), Positives = 31/63 (49%)
Frame = +1
Query: 94 IEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA*RNLP 273
++M+LDDIIK+N+K G G N GRGG + SG +R NR R P
Sbjct: 5 LDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGS----GSNSGPSRRFANRVGARTAP 60
Query: 274 TIR 282
R
Sbjct: 61 YSR 63
>At5g62440.1 68418.m07837 expressed protein
Length = 202
Score = 31.9 bits (69), Expect = 0.17
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +1
Query: 64 EFQIITMVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNR 222
+F VDQI + L + +K G G GR +R GRGGG G R R
Sbjct: 151 DFSFRKCVDQI-LPLPENMKTPGANGNGHGGGRGGGGGRRGGRGGGRGGRFRR 202
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 187 GRGGGAGFRSNRSGGVQRGRNR 252
GRGGG G R R GG + GR R
Sbjct: 181 GRGGGGGRRGGRGGG-RGGRFR 201
>At1g27090.1 68414.m03302 glycine-rich protein
Length = 420
Score = 31.5 bits (68), Expect = 0.22
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 127 NKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA*RNLPTIRG 285
N++ R G G N R GRGGG G+++ R + G RN RG
Sbjct: 341 NQRGRRGARRGGGGYQNGRGGRGGGGGYQNGRYESYDQSGGNGYQRNYYNNRG 393
>At4g23910.1 68417.m03439 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 198
Score = 31.1 bits (67), Expect = 0.29
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 91 QIEMALDDIIK-ANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRS 225
++ MALDDIIK A +KT + G + + NK G A R+N S
Sbjct: 18 KVAMALDDIIKLAKRKTNVNKGKKPRREKNKNQNFNGAA--RNNTS 61
>At1g77030.1 68414.m08970 glycine-rich protein
Length = 349
Score = 31.1 bits (67), Expect = 0.29
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Frame = +1
Query: 148 GGAGRKFDANK-RTGRGGGAGFRSNRSG------GVQRGRNRGA*RNLPTI 279
GG GR F ++ R GR GG F R G G +RG RG + PT+
Sbjct: 232 GGGGRDFGSSSDRGGRSGGRDFGGRRGGASTSSRGGKRGGGRGGGESDPTL 282
Score = 30.7 bits (66), Expect = 0.39
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 175 NKRTGRGGGAGFRSNRSGGVQRGR 246
+KR GRGG G R R GG + GR
Sbjct: 202 SKRGGRGGRGGARGGRGGGARGGR 225
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 31.1 bits (67), Expect = 0.29
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +1
Query: 82 MVDQIEMALDDIIKANKKTRIGG--GAGRKFDANKRTGRGGGAGFRSNRSGG--VQRG 243
M D + M LD+I+K +K R G+ GRGG G GG V+RG
Sbjct: 1 MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRG 58
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 30.3 bits (65), Expect = 0.51
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +1
Query: 94 IEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA 258
++M+LDD+I N+K+R G G R G G G+G R R R A
Sbjct: 5 LDMSLDDMIAKNRKSRGGAGPAR--------GTGSGSGPGPTRRNNPNRKSTRSA 51
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 30.3 bits (65), Expect = 0.51
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +1
Query: 94 IEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA 258
++M+LDD+I N+K+R G G R G G G+G R R R A
Sbjct: 5 LDMSLDDMIAKNRKSRGGAGPAR--------GTGSGSGPGPTRRNNPNRKSTRSA 51
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 30.3 bits (65), Expect = 0.51
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 82 MVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGG 201
M + M LD+I+K K R G GR + GRGGG
Sbjct: 1 MSGALNMTLDEIVKRGKTARSG---GRGISRGRGRGRGGG 37
>At3g04640.1 68416.m00497 glycine-rich protein predicted proteins,
Arabidopsis thaliana
Length = 159
Score = 30.3 bits (65), Expect = 0.51
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +1
Query: 148 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA*RNLPTIRG 285
GG GR F + RGGG S+R GG R G R +P G
Sbjct: 85 GGGGRSFGGGGSSSRGGGGS--SSRGGGGSSSRGGGL-RPIPIYGG 127
Score = 29.1 bits (62), Expect = 1.2
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +1
Query: 91 QIEMALD-DIIKAN--KKTRI----GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRN 249
++E+ D D+I+AN K T + GGG GR GR G G S+R GG R
Sbjct: 49 EVELKPDGDVIEANLPKLTVVVKKGGGGGGRGGGGFGGGGRSFGGGGSSSRGGGGSSSRG 108
Query: 250 RG 255
G
Sbjct: 109 GG 110
>At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7)
identical to fibrillarin 1 GI:9965653 from [Arabidopsis
thaliana]; C-terminus identical to SKP1 interacting
partner 7 GI:10716959 from [Arabidopsis thaliana];
contains Pfam domain PF01269: Fibrillarin
Length = 308
Score = 29.5 bits (63), Expect = 0.89
Identities = 19/47 (40%), Positives = 19/47 (40%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA*RNLPTIRG 285
GGG R G GGG F RSG R RG R P RG
Sbjct: 10 GGGGFRGGRDGGGRGFGGGRSFGGGRSGDRGRSGPRGRGRGAPRGRG 56
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 29.5 bits (63), Expect = 0.89
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 142 IGGGAGRKFDANKRTGRGGGAGFRSNRSGG 231
IGGGAG G GGG R +SGG
Sbjct: 140 IGGGAGGAIGGGASGGVGGGGKGRGGKSGG 169
Score = 29.5 bits (63), Expect = 0.89
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
GGG G A G GGG G GGV G G
Sbjct: 471 GGGTGGSVGAGGGVGVGGGGGIGGGAGGGVGGGVGGG 507
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 142 IGGGAGRKFDANKRTGRGGGAGFRSNRSGG 231
+GGGAG G GGG R + GG
Sbjct: 85 VGGGAGGAIGGGASGGAGGGGKGRGRKGGG 114
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGV-QRGRNRG 255
GGGAG A G G G SGGV G+ RG
Sbjct: 127 GGGAGGSVGAGGGIGGGAGGAIGGGASGGVGGGGKGRG 164
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +1
Query: 142 IGGGA-GRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
IGGGA G K GR GG G GGV G G
Sbjct: 93 IGGGASGGAGGGGKGRGRKGGGGAGGGVGGGVGAGGGAG 131
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +1
Query: 142 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA 258
+GGG G R G G SGG G + GA
Sbjct: 370 VGGGGGGSVGGGGRGSGGASGGASGGASGGASGGASGGA 408
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +1
Query: 142 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
+G GAG G GGG G SGGV G G
Sbjct: 49 VGAGAGGGASGGIGVGGGGGGGGGIGGSGGVGAGGGVG 86
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 29.5 bits (63), Expect = 0.89
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
GGG GR+ +G GGG R G GR G
Sbjct: 102 GGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREG 138
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 29.5 bits (63), Expect = 0.89
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
GGG GR+ +G GGG R G GR G
Sbjct: 119 GGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREG 155
Score = 28.7 bits (61), Expect = 1.6
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1
Query: 67 FQIITMVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGR 246
F +T D E A+ D I+ + G + +A R G GGG G R GG + G
Sbjct: 51 FGFVTFKD--EKAMKDAIEGMNGQDLDGRSITVNEAQSR-GSGGGGGHRGGGGGGYRSGG 107
Query: 247 NRG 255
G
Sbjct: 108 GGG 110
>At5g45720.1 68418.m05621 hypothetical protein
Length = 900
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 52 KKYLEFQIITMVDQIEMA---LDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNR 222
KK E + T+ DQ+ DD++ N + R G RKF +R GR R N
Sbjct: 146 KKVNEAIVKTLSDQLNEVGGDSDDLVSCNVRPRGDGCRRRKFRGTRRAGR--AVNVRDNA 203
Query: 223 SG 228
+G
Sbjct: 204 AG 205
>At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear
antigen EBNA-1 (GI:3342234) {Cercopithecine herpesvirus
15}
Length = 118
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 142 IGGGAGRKFDANKRTGRGG-GAGFRSNRSGGVQRGRNRGA*R 264
+ GG+G + +G GG G+G R+N G RG RG R
Sbjct: 19 VSGGSGSGGSGSGGSGSGGSGSGGRANGRGNGGRGSGRGGGR 60
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
G G+G + GRG G G S R GG GR G
Sbjct: 32 GSGSGGSGSGGRANGRGNG-GRGSGRGGGRGDGRGDG 67
>At1g07135.1 68414.m00759 glycine-rich protein
Length = 155
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 145 GGGAGRKFDANKRTG---RGGGAGFRSNRSGGVQRG 243
GGG G + R+G RGGG G S+RS +RG
Sbjct: 67 GGGGGGRGGGGARSGGRSRGGGGGSSSSRSRDWKRG 102
>At1g04800.1 68414.m00476 glycine-rich protein
Length = 200
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +1
Query: 142 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
+ GGAG+ FD G GGAG GGV +G G
Sbjct: 119 VDGGAGKGFDGGVGKGVDGGAG--KGFDGGVGKGFEGG 154
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 142 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA 258
+ GGAG+ FD G+G G GGV +G + GA
Sbjct: 135 VDGGAGKGFDGG--VGKGFEGGIGKGIEGGVGKGFDGGA 171
Score = 26.2 bits (55), Expect = 8.3
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
GGGAG+ D G GGAG GG +G + G
Sbjct: 96 GGGAGKGVDGGFGKGVDGGAG--KGVDGGAGKGFDGG 130
>At4g30460.1 68417.m04325 glycine-rich protein
Length = 162
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA 258
G G+G + + + G GGG G GG RG G+
Sbjct: 104 GSGSGGRSGSGRGRGSGGGGGHGGGGGGGGGRGGGGGS 141
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 151 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
G+GR + G GGG G R GG G G
Sbjct: 112 GSGRGRGSGGGGGHGGGGGGGGGRGGGGGSGNGEG 146
>At2g28670.1 68415.m03485 disease resistance-responsive family
protein / fibroin-related contains similarity to silk
fibroin heavy chain [Bombyx mori] gi|765323|gb|AAB31861;
contains disease resistance response protien domain
Pfam:FP03018
Length = 447
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +1
Query: 136 TRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
T IG GAG + TG G GAG S+ SG G G
Sbjct: 45 TGIGFGAGTGSSGSGSTGFGFGAGSGSSGSGSTGSGLGAG 84
>At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|O04379 Argonaute
protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
protein (ZWILLE protein) {Arabidopsis thaliana};
contains Pfam profiles PF02171: Piwi domain, PF02170:
PAZ domain
Length = 1013
Score = 28.7 bits (61), Expect = 1.6
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRG---GGAGFRSNRS---GGVQRGRNRGA*R 264
GG G + D R GRG GG G R GG ++GR RG+ R
Sbjct: 4 GGYRGGRGDGRGRGGRGYGGGGGGGEQGRDRGYGGGEQGRGRGSER 49
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
GGG G + ++ G G R + GG RG+ RG
Sbjct: 23 GGGGGGEQGRDRGYGGGEQGRGRGSERGGGNRGQGRG 59
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 139 RIGGGAGRKFDANKRTGRGGGAG 207
R GGG G +F GRGG G
Sbjct: 644 RFGGGGGNRFGGGGGRGRGGSGG 666
>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
identical to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 355
Score = 28.3 bits (60), Expect = 2.1
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 112 DIIKANKKTRIGGGAGRKFDANKRTGRGGG-AGFRSNRSGGVQRGRNRGA*RNLPTIRG 285
D+ K++ + R GGGA R + G GGG G SN G +R R R R T RG
Sbjct: 103 DVSKSSYERRGGGGAPRGSFRGEGGGPGGGRRGGFSNEGGDGERPR-RAFERRSGTGRG 160
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 28.3 bits (60), Expect = 2.1
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +1
Query: 139 RIGGGAGRKFDANK-RTGRGGGAGFRSNR---SGGVQRGRNRGA*RNLPTIRG 285
R G G GR D + R G GGG G R G RG +RG R T +G
Sbjct: 497 RFGSGGGRGRDGGRGRFGSGGGRGRDGGRGRFGSGGGRGSDRGRGRPSFTPQG 549
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 27.9 bits (59), Expect = 2.7
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +1
Query: 67 FQIITMVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGR 246
F +T D E A+ D I+ + G +A R G GGG G R GG + G
Sbjct: 49 FGFVTFKD--EKAMRDAIEEMNGKELDGRVITVNEAQSR-GSGGGGGGRGGSGGGYRSGG 105
Query: 247 NRG 255
G
Sbjct: 106 GGG 108
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 27.9 bits (59), Expect = 2.7
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +1
Query: 67 FQIITMVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGR 246
F +T D E A+ D I+ + G +A R G GGG G R GG + G
Sbjct: 49 FGFVTFKD--EKAMRDAIEEMNGKELDGRVITVNEAQSR-GSGGGGGGRGGSGGGYRSGG 105
Query: 247 NRG 255
G
Sbjct: 106 GGG 108
>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
4B, putative/ eIF-4B, putative similar to eukaryotic
initiation factor 4B [Arabidopsis thaliana] GI:6739518
Length = 532
Score = 27.9 bits (59), Expect = 2.7
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 106 LDDIIKANKKT--RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA 258
LDD ++ +K R G GAGR ++RT G+ + +R R+RGA
Sbjct: 446 LDDKVRFRQKPVERPGSGAGRTGTYSERTHSRAGSIDETRSFESTERPRSRGA 498
>At1g72080.1 68414.m08332 hypothetical protein
Length = 243
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 169 DANKRTGRGGGAGFRSNRSGGVQRGRNRGA*RN 267
D ++ GRG G G R G RGR RG R+
Sbjct: 116 DGSRSRGRGRGRGRGRGRGRGRGRGRGRGRNRS 148
Score = 26.2 bits (55), Expect = 8.3
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +1
Query: 67 FQIITMVDQIEMALDD--IIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQR 240
F I + + M ++ I ++ R G G + R GRG G G R G R
Sbjct: 85 FATINTEEHLTMQIESPSTIINTEERRAGDDDGSRSRGRGR-GRGRGRGRGRGRGRGRGR 143
Query: 241 GRNRGA*RN 267
GRNR R+
Sbjct: 144 GRNRSRSRS 152
>At1g55250.1 68414.m06310 expressed protein weak similarity to PUMA1
[Parascaris univalens] GI:3068590
Length = 522
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +2
Query: 131 KRQGLEVVLEENLMQTKEQDVEAVLDFVATALVVYNEVEIV 253
++ GLE+ EE + ++ QD+++ +F+A A + E+E++
Sbjct: 452 EKNGLELETEEAIQDSERQDIKS--EFIAMASTLSKEMEMM 490
>At1g19870.1 68414.m02492 calmodulin-binding family protein contains
Pfam profile: PF00612 IQ calmodulin-binding motif
Length = 794
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 107 WMIL*KPTKRQGLEVVLEE-NLMQTKEQDVEAVLDFVATALVVYNEVE 247
WM + KP K + EE NL +T+ + DFV + V N+ E
Sbjct: 339 WMSVPKPEKTSKANLTTEEQNLEETQNVKISPQADFVNSDSTVENKTE 386
>At3g06130.1 68416.m00704 heavy-metal-associated domain-containing
protein contains Pfam heavy metal associated domain
PF00403
Length = 473
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +1
Query: 115 IIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG---RNRGA*RN 267
++ A K + GG + GGGAG GG + G +N+G +N
Sbjct: 239 MMNAQKNANLAGGPAKNGGKGAPAAGGGGAGGGKGAGGGAKGGPGNQNQGGGKN 292
>At4g29030.1 68417.m04151 glycine-rich protein glycine-rich protein
- Onobrychis viciifolia,PID:g2565429
Length = 115
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 142 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG 243
+GGG G + G GGG+G + SGG G
Sbjct: 78 LGGGLGGGAGSGLGGGLGGGSGIGAGTSGGSTGG 111
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 142 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGV 234
+GGGAG G G GAG +GGV
Sbjct: 82 LGGGAGSGLGGGLGGGSGIGAGTSGGSTGGV 112
>At4g25890.1 68417.m03723 60S acidic ribosomal protein P3 (RPP3A)
acidic ribosomal protein P3a - maize, PIR2:T02037
Length = 119
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 142 IGGGAGRKFDANKRTGRGGGAG 207
+GGG G F A GGGAG
Sbjct: 69 VGGGGGGGFSAGGAASSGGGAG 90
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA 258
GGG G + + RGGG G S RSGG G R +
Sbjct: 199 GGGYGSERGGGYGSERGGGYG--SQRSGGGYGGSQRSS 234
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA 258
GGG G + + RGGG G S RSGG G R +
Sbjct: 207 GGGYGSERGGGYGSERGGGYG--SQRSGGGYGGSQRSS 242
>At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protein
contains Pfam PF00641: Zn-finger in Ran binding protein
and others; contains Prosite PS00018: EF-hand
calcium-binding domain; similar to Zinc finger protein
265 (Zinc finger, splicing) (Fragment). (SP:Q9R020){Mus
musculus}
Length = 849
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 148 GGAGRKFDANKRTGRGGGAGFRSNRSG-GVQRGRNR 252
GG +FD GRG G+ SNR G G G NR
Sbjct: 791 GGFDDEFDRKSSRGRGSGSFRGSNRGGRGGGGGGNR 826
>At1g36675.1 68414.m04563 glycine-rich protein
Length = 268
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +1
Query: 160 RKFDANKRT---GRGGGAGFRSNRSGGVQRGRNRG 255
++F+A K+ G G G G R R GG GR G
Sbjct: 185 KRFEATKKEDGRGNGRGGGSRDGRGGGSGDGRGIG 219
>At1g29030.1 68414.m03553 apoptosis inhibitory 5 (API5) family
protein contains Pfam profile PF05918: Apoptosis
inhibitory protein 5 (API5)
Length = 556
Score = 27.1 bits (57), Expect = 4.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 127 NKKTR-IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGR 246
NK++ I G GR +++ GRG G G S GG RGR
Sbjct: 514 NKRSEGISHGGGR--GSHRGRGRGQGQGRHSGGGGGRGRGR 552
>At5g64360.3 68418.m08085 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226 DnaJ domain
Length = 464
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 112 DIIKANKKTRIGGGAGRKFDANKRTG 189
D+++ NKKT +G G +NK+ G
Sbjct: 319 DVVQVNKKTNVGKGKETYVRSNKKHG 344
>At5g64360.2 68418.m08084 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226 DnaJ domain
Length = 464
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 112 DIIKANKKTRIGGGAGRKFDANKRTG 189
D+++ NKKT +G G +NK+ G
Sbjct: 319 DVVQVNKKTNVGKGKETYVRSNKKHG 344
>At3g56990.1 68416.m06344 glycine-rich protein conserved
hypothetical protein SPCC330.09 - Schizosaccharomyces
pombe, PIR:T41319
Length = 711
Score = 26.6 bits (56), Expect = 6.3
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 130 KKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGR 246
K T I GG + R GGG+ + R GG RGR
Sbjct: 672 KSTNIRGGFRGRGGGGFRGRGGGGSRGKGGRGGGRGRGR 710
>At3g44850.1 68416.m04832 protein kinase-related contains eukaryotic
protein kinase domain, INTERPRO:IPR000719
Length = 534
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 136 TRIGGGAGRKFDANKRTGRGGGAGFRSNR 222
TR+ G + ANK+ GRG G RS R
Sbjct: 282 TRLMEGEEAREKANKKNGRGSRRGSRSTR 310
>At1g36940.1 68414.m04604 hypothetical protein
Length = 181
Score = 26.6 bits (56), Expect = 6.3
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 85 VDQIEMA-LDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRS 216
+D I++A LD + KKT GGAG K N R GG RS
Sbjct: 122 IDVIDVAELDPPLPVVKKTH-DGGAGDKAAENLWKRRSGGCQLRS 165
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 106 LDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRS 225
L +++++ G G GR F + GRGGG G + +RS
Sbjct: 540 LSALVRSSGSGYGGSGGGRNFRP-RGGGRGGGFGDKRSRS 578
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
G G + G GGG G R GG Q G G
Sbjct: 40 GASGGGSYGGRGGYGGGGGRGNRGGGGGGYQGGDRGG 76
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
G G + G GGG G R GG Q G G
Sbjct: 40 GASGGGSYGGRGGYGGGGGRGNRGGGGGGYQGGDRGG 76
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/37 (32%), Positives = 14/37 (37%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 255
GGGA + G GGG + GG G G
Sbjct: 244 GGGAAGGYGGGGGGGEGGGGSYGGEHGGGSGGGHGGG 280
>At5g15610.2 68418.m01827 proteasome family protein contains Pfam
domain, PF01399: PCI domain
Length = 413
Score = 26.2 bits (55), Expect = 8.3
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 167 LMQTKEQDVEAVLDFVATALVVYNEVEIVGHNEIYQLFEGNSNN---*MILKLQMAGKCD 337
L + KE+ V AV++FV + + +++ H + QL E + NN +LK+ + + D
Sbjct: 216 LSEAKEEAVRAVIEFVKAPSIF--QCDLLDHPAVAQL-EKDPNNAPVYQLLKIFLTQRLD 272
Query: 338 ASM 346
A M
Sbjct: 273 AYM 275
>At5g15610.1 68418.m01826 proteasome family protein contains Pfam
domain, PF01399: PCI domain
Length = 442
Score = 26.2 bits (55), Expect = 8.3
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 167 LMQTKEQDVEAVLDFVATALVVYNEVEIVGHNEIYQLFEGNSNN---*MILKLQMAGKCD 337
L + KE+ V AV++FV + + +++ H + QL E + NN +LK+ + + D
Sbjct: 216 LSEAKEEAVRAVIEFVKAPSIF--QCDLLDHPAVAQL-EKDPNNAPVYQLLKIFLTQRLD 272
Query: 338 ASM 346
A M
Sbjct: 273 AYM 275
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 26.2 bits (55), Expect = 8.3
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQR 240
GG G + A G GGG G +NRSGG R
Sbjct: 75 GGRTGYGYGAG---GGGGGGGGWNNRSGGWDR 103
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 26.2 bits (55), Expect = 8.3
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 145 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQR 240
GG G + A G GGG G +NRSGG R
Sbjct: 75 GGRTGYGYGAG---GGGGGGGGWNNRSGGWDR 103
>At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 383
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +1
Query: 124 ANKKTRIGGGAG-RKFDANKRTGRGGGAGFRSNRSGGVQRGRN 249
++ +R+ G R+F N RTG GGG R RN
Sbjct: 9 SSSSSRVSNTYGNRQFSDNPRTGSGGGVNESFQRRSDAPHKRN 51
>At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 406
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +1
Query: 124 ANKKTRIGGGAG-RKFDANKRTGRGGGAGFRSNRSGGVQRGRN 249
++ +R+ G R+F N RTG GGG R RN
Sbjct: 9 SSSSSRVSNTYGNRQFSDNPRTGSGGGVNESFQRRSDAPHKRN 51
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 26.2 bits (55), Expect = 8.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 136 TRIGG--GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGA 258
+R GG G G + + GR GG G+ + SGG GR+ G+
Sbjct: 492 SRSGGSFGGGMRDRGSSFGGRSGGGGYGGS-SGGYGGGRSGGS 533
>At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to SP|P52597
Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
{Homo sapiens}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 350
Score = 26.2 bits (55), Expect = 8.3
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = +1
Query: 52 KKYLEFQIITMVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGG 231
++Y+E T + + +++ ++ GG G N G GGG G SGG
Sbjct: 179 RRYVEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGG 238
>At1g72180.1 68414.m08346 leucine-rich repeat transmembrane protein
kinase, putative similar to GI:3641252 from [Malus x
domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999))
Length = 977
Score = 26.2 bits (55), Expect = 8.3
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 76 ITMVDQIEMALDDIIKANKKTRIG-GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG 243
I Q+E+ +D+I + ++ IG G AG+ + + + G GG + + GG + G
Sbjct: 667 IASFHQMELDVDEICRLDEDHVIGSGSAGKVYRVDLKKG-GGTVAVKWLKRGGGEEG 722
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,792,177
Number of Sequences: 28952
Number of extensions: 175552
Number of successful extensions: 905
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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