Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20475
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    30   0.20 
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    27   2.4  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   3.2  
SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo...    26   3.2  
SPCC338.12 |||protease inhibitor |Schizosaccharomyces pombe|chr ...    25   9.7  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    25   9.7  
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.7  

>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 258 LGEGVPLNSSGANIFLNTGKSKDAKLGSRDCPVIHLKTEKPSDLGVHINTTFSIASS 428
           L  GVP +++GANI  N+  +    + S    V H+  + PS LG H     SI  S
Sbjct: 90  LNAGVPPSNTGANITTNSNNNAQT-ISSSSQSVGHI--DNPSGLGTHGKVRLSIKLS 143


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 337 PSFASLLLPVFKNIFAPDEFNGTP 266
           P+FA  LLP   +I +PD  +G P
Sbjct: 125 PAFARTLLPPVSSIASPDILSGAP 148


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 104 VNKTSAKLMLRLISTQFRFDANANARVNSSTTLHR 208
           V +T A+L  RL   + R  +  N   N+STT HR
Sbjct: 103 VKETHARLEQRLEEIRKRNQSRKNQMSNNSTTYHR 137


>SPAP27G11.07c |||serine/threonine protein kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 238

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 383 RPWCTYKYYILDSVFQENKAFVHFKFYAKCHMYG 484
           RP   +++ ILD      +  V  +  AKCH  G
Sbjct: 50  RPAKRWRHPILDQKLSRKRCLVEARLLAKCHYVG 83


>SPCC338.12 |||protease inhibitor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 536 SSLKXFHSNIESNGTTKNHTYDT 468
           +S+    S++E++G    HTYDT
Sbjct: 17  ASMDKIKSDLEASGAKIGHTYDT 39


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 297 YLHLTSLMEHLPLNDLPFNVHYKYY 223
           Y HL      L L   P N+H+ YY
Sbjct: 314 YTHLNQETRGLVLRQRPVNLHHLYY 338


>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 19/91 (20%), Positives = 41/91 (45%)
 Frame = -2

Query: 345 LESLVLHLCFYRCSKIYLHLTSLMEHLPLNDLPFNVHYKYYCSIYERCSVVLLFTRALAL 166
           L +++ H   +  +++ LH+   ++ L +      VH   +   Y   S  + + +    
Sbjct: 9   LHNVLSHTVVFCFTEVSLHI---VKQLGVESYACTVHASRFQKSY---SASIDYCQRFLF 62

Query: 165 ASNLNWVDISLNINFALVLFT*INIYLHFKV 73
           +SNL    ++LNI F   +F  +  +L F +
Sbjct: 63  SSNLKHNYVNLNIIFTSCIFRSLREFLRFYI 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,987
Number of Sequences: 5004
Number of extensions: 41886
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)