Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20475
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233...    30   1.1  
08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167     27   9.9  

>02_05_0181 -
           26522849-26522932,26523053-26523184,26523263-26523329,
           26523800-26524186,26524259-26524360,26524983-26525132,
           26525552-26525636,26525743-26525769,26525858-26526116,
           26526659-26526751,26526921-26527013,26527122-26527289,
           26527436-26527594,26528214-26528273,26528392-26528487
          Length = 653

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 284 VRCKYIFEHR*KQRCKTRLSRLPSYTSKNRETIRP 388
           V C+YIF H+ +Q CKT +  +   T  N+E  RP
Sbjct: 125 VPCEYIFGHKDQQTCKTWVEHIK--TCINKEQDRP 157


>08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167
          Length = 214

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 353 SYTSKNRETIRPWCTYKYYILDSV 424
           S++  NR    PWC   +YILD++
Sbjct: 191 SHSDLNRNAEWPWCITVWYILDAL 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,461,324
Number of Sequences: 37544
Number of extensions: 231283
Number of successful extensions: 427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)