Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20475
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   1.9  
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)                    28   5.8  

>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1565

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 427 EDAIENVVFICTPRSDGFS-VFRCITGQSREPSFASLLLPVFKNI 296
           ED++ + + IC P + G+S  ++C+     +  FA+  L V  N+
Sbjct: 693 EDSMGSPLIICEPNNRGYSGTYKCVATNKLDTDFATGSLNVLGNV 737


>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 434

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 391 PRSDGFSVFRCITGQSREPSFASLLLP 311
           P S+ + VFRC     R PS  +LL+P
Sbjct: 330 PPSNSWHVFRCSRQHPRPPSSVTLLIP 356


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,084,922
Number of Sequences: 59808
Number of extensions: 290990
Number of successful extensions: 654
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)