Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20475
         (550 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071036-1|AAL48658.1|  287|Drosophila melanogaster RE12030p pro...    30   2.4  
AE013599-1374|AAF58600.2|  287|Drosophila melanogaster CG33145-P...    30   2.4  
AE013599-1373|AAO41403.1|  466|Drosophila melanogaster CG33145-P...    30   2.4  

>AY071036-1|AAL48658.1|  287|Drosophila melanogaster RE12030p
           protein.
          Length = 287

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +3

Query: 252 DHL-GEGVPLNSSGANIFLNTGKSKD-AKLGSRDCPVIHLKTEKPSDL 389
           D+L GEG  L +S   +F+  G+ KD A LG+     IH+++EK +D+
Sbjct: 191 DYLSGEGQSLTASVRIVFI-VGRQKDEAMLGNETLNRIHIESEKYNDI 237


>AE013599-1374|AAF58600.2|  287|Drosophila melanogaster CG33145-PA,
           isoform A protein.
          Length = 287

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +3

Query: 252 DHL-GEGVPLNSSGANIFLNTGKSKD-AKLGSRDCPVIHLKTEKPSDL 389
           D+L GEG  L +S   +F+  G+ KD A LG+     IH+++EK +D+
Sbjct: 191 DYLSGEGQSLTASVRIVFI-VGRQKDEAMLGNETLNRIHIESEKYNDI 237


>AE013599-1373|AAO41403.1|  466|Drosophila melanogaster CG33145-PB,
           isoform B protein.
          Length = 466

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +3

Query: 252 DHL-GEGVPLNSSGANIFLNTGKSKD-AKLGSRDCPVIHLKTEKPSDL 389
           D+L GEG  L +S   +F+  G+ KD A LG+     IH+++EK +D+
Sbjct: 191 DYLSGEGQSLTASVRIVFI-VGRQKDEAMLGNETLNRIHIESEKYNDI 237


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,443,160
Number of Sequences: 53049
Number of extensions: 412923
Number of successful extensions: 750
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)