Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20475
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024779-4|AAK68484.1|  439|Caenorhabditis elegans Hypothetical ...    31   0.72 
AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine re...    28   5.1  
AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AC024779-4|AAK68484.1|  439|Caenorhabditis elegans Hypothetical
           protein Y43B11AL.1 protein.
          Length = 439

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
 Frame = -2

Query: 348 NLESLVLHLCFYRCSKIYLHLTSLMEHLPLN--DLPFNVHYKYYCSIY-ERCSVV---LL 187
           NL SL+L+  F  C K+ +H T+  E  PL+  ++   V  +   +IY  +C  V    +
Sbjct: 145 NLSSLLLNKNFTNCQKLEVHETAETEVCPLDLEEIVKEVRVEKEINIYTTQCETVRIEQI 204

Query: 186 FTRALALASNLNWVD----ISLNINF 121
           F     +  N  W+     +SLN  F
Sbjct: 205 FNLETVILHNAQWITLPDLLSLNCRF 230


>AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical
           protein R07C12.1 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 398 YKYYILDSVFQENKAFVHFKFY 463
           +K+ I+  +FQEN  F+ FK Y
Sbjct: 5   FKFKIISEIFQENFRFIFFKLY 26


>AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine
           receptor, class x protein104 protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +3

Query: 378 PSDLGVHINTTFSIASSKKIKLLFILNFMLSVICMVLSCSIA 503
           P DL  H+  T S  S + I  LF+  F+L V   VL+ SIA
Sbjct: 151 PVDLE-HVGYTSSECSVQVIDYLFLAVFLLGVFTNVLNVSIA 191


>AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical
           protein Y68A4A.3 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 187 VYSSIGVSVEPELG*YQS*H*FCTSFIHLNKHLF 86
           VY+S+ + VEP +G +QS    C  F  L K +F
Sbjct: 45  VYTSLNIFVEPTIGTFQS---VCYLFQDLRKSIF 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,535,932
Number of Sequences: 27780
Number of extensions: 232167
Number of successful extensions: 518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)