Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20475
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       25   0.51 
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           24   0.88 
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           24   0.88 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.7  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 354 LGNLESLVLHLCFYRCSKIYLHLTSLMEHLPLNDL 250
           +GN   L+L  C  R SK  +H+  ++ HL + DL
Sbjct: 53  IGNTTVLILITCRKRVSKSRIHI--MLMHLAIADL 85


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 333 VLHLCFYRCSKIYLHLTSLMEHLPLNDLPFNVHYKYYCS 217
           V+   F +  +   + T+ M+  PLN+LP N  ++ +C+
Sbjct: 50  VMTAFFKKYPEYQRYFTAFMD-TPLNELPANKRFQAHCA 87


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 333 VLHLCFYRCSKIYLHLTSLMEHLPLNDLPFNVHYKYYCS 217
           V+   F +  +   + T+ M+  PLN+LP N  ++ +C+
Sbjct: 50  VMTAFFKKYPEYQRYFTAFMD-TPLNELPANKRFQAHCA 87


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 408 TFSIASSKKIKLLFILNFMLSVICMVLSCSIAFY 509
           TFS+ S   +  LF++   LSV   +L C +A Y
Sbjct: 19  TFSLLSVLLVGFLFLILIFLSVAGNILVC-VAIY 51


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 246 KEDHLGEGVPLNSSGANIFLNTGKSKD 326
           +++ L +  P N  G + FLN  K KD
Sbjct: 649 QKEFLPKEFPANIEGTSYFLNDYKHKD 675


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,381
Number of Sequences: 438
Number of extensions: 2955
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)