Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20475
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26930.1 68418.m03211 zinc finger (GATA type) family protein ...    28   4.7  
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing...    28   4.7  
At3g60120.1 68416.m06713 glycosyl hydrolase family 1 protein con...    27   8.3  
At3g12650.1 68416.m01575 expressed protein                             27   8.3  
At2g25330.1 68415.m03030 meprin and TRAF homology domain-contain...    27   8.3  

>At5g26930.1 68418.m03211 zinc finger (GATA type) family protein
           various predicted proteins, Arabidopsis thaliana
          Length = 120

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 348 CPVIHLKTEKPSDLGVHINTTFSIASSKKIKLL 446
           C + H K  +   LG+HI  +    +SKKI LL
Sbjct: 53  CGIRHRKQRRSELLGIHIIRSHKSLASKKINLL 85


>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
           protein
          Length = 776

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 246 KEDHLGEGVPLNSSGANIFLNTGKSKDAKLGSRDCPVIHLKT 371
           K  H   G+  +SSG      T  ++ A  GS DC +I L+T
Sbjct: 333 KSQHYYSGLGEHSSGVFGRFRTRHNRSASQGSLDCNMIDLRT 374


>At3g60120.1 68416.m06713 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; similar to anther-specific protein ATA27
           (GI:2746341)  [Arabidopsis thaliana]
          Length = 534

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 279 NSSGANIFLNTGKSKDAKLGSRDCPV 356
           ++    +F N  K KD K+G   CPV
Sbjct: 223 HAEAVEVFRNNPKCKDGKIGIAHCPV 248


>At3g12650.1 68416.m01575 expressed protein
          Length = 238

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +3

Query: 372 EKPSDLGVHINTTFSIASSKKIKLLFILNFMLSVICMVLSC 494
           +K  +LG     T ++  +K + LLF+   ++S++C+V  C
Sbjct: 188 KKMEELGRLQILTLTLQVAKNLNLLFVRARVVSILCVVALC 228


>At2g25330.1 68415.m03030 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 693

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +3

Query: 315 KSKDAKLGSRDCPVI---HLKTEKPSDLGVHINTTFSIASS 428
           KSK  ++G+RDC +I     +++ PS L + +  T S +SS
Sbjct: 385 KSKRFQIGNRDCRLIVYPRGQSQPPSHLSIFLEVTDSRSSS 425


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,593,859
Number of Sequences: 28952
Number of extensions: 205007
Number of successful extensions: 418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)