Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20467
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 31 0.15
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 31 0.15
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 30 0.46
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 28 1.9
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 28 1.9
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 4.3
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 26 5.7
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 26 7.5
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 31.5 bits (68), Expect = 0.15
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 498 SEVRAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKSTAPGYQEANEK 665
+E AG T AD + + + + + K Y N+KRW V S P + A EK
Sbjct: 158 NEYFAGEQFTAADPQMCFPIFAAQRDYLSQKPYKNIKRWMRVV-SDRPACRIAAEK 212
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 31.5 bits (68), Expect = 0.15
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 179 EQLKPEYLKLNPQHTVPTLVD 241
EQ PE+L LNP VPTL+D
Sbjct: 40 EQKSPEHLALNPNGRVPTLID 60
Score = 28.3 bits (60), Expect = 1.4
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 WESRAIITYLVNKYAKGSSL-YPEDPKARVLVDQRLYFDI---GTLYQRFSDY-FYPQVF 420
WES AI+ YL +KY + P D V Q L+F G ++ + + Y Q
Sbjct: 69 WESDAILIYLADKYDTERKISLPRDHPEYYKVIQYLFFQASGQGIIWGQAGWFSVYHQEL 128
Query: 421 AGAPADKAKNEKVQEALQLLDKFLEGQKY 507
+ + +NE ++ L +L+ L+ + Y
Sbjct: 129 VISAITRYRNE-IKRVLGVLEDILKDRDY 156
>SPCC965.07c |gst2||glutathione S-transferase
Gst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 29.9 bits (64), Expect = 0.46
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 176 GEQLKPEYLKLNPQHTVPTLVD 241
GEQ E+L LNP VPTLVD
Sbjct: 39 GEQKCKEHLALNPNGRVPTLVD 60
Score = 29.5 bits (63), Expect = 0.61
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Frame = +1
Query: 256 WESRAIITYLVNKY--AKGSSLYPEDPKARVLVDQRLYFDI---GTLYQR--FSDYFYPQ 414
WES AI+ YL +KY + SL +DP+ L+ Q L+F G ++ + + ++F+ +
Sbjct: 69 WESDAILIYLADKYDTDRKISLSFDDPEYYKLI-QYLFFQASGQGVIWGQAGWFNFFHHE 127
Query: 415 VFAGAPADKAKNEKVQEALQLLDKFLEGQKY 507
A + +NE ++ L +L+ L+ + Y
Sbjct: 128 PVVSA-VTRYRNE-IKRVLGVLEDILKDRDY 156
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 713 SLFKHAIDKSLECLQSFLVGLLVTRSCTLNRLVPS 609
S +K++++ L CL +L+ +TRS T+ + V S
Sbjct: 51 SWYKYSLESGLVCLYLYLIYRWITRSFTVKQTVGS 85
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 27.9 bits (59), Expect = 1.9
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +1
Query: 190 TRIFEVEPSTHGPDPSRRWSFNWESRAIITYLVNKYAKGSSLYPEDPKARVLVDQ---RL 360
TR F V+ + PD F+W+ + Y KY GS+ Y +P +++ Q L
Sbjct: 208 TRKFLVKLAKALPDAKFFGIFDWDPHGLCIYSCFKY--GSNAYSHEPHSQLRNLQLLGPL 265
Query: 361 YFDIGTLYQRFS 396
Y DI Q FS
Sbjct: 266 YEDIFNKNQEFS 277
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 600 NVKRWYETVKSTAPGYQEANEKGLEAFKGLVNS 698
+V + YE+++S Y+ ANEK EA +V+S
Sbjct: 739 SVHKNYESLRSQLLEYKAANEKHTEAILSVVSS 771
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 5.7
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -3
Query: 770 QVYSSDVILNKFSFRVDKCSLFKHAIDKSLECLQSFLVGLLVTRSCTLNRLVPSLNVGVF 591
+++ D +LN+ F + ++ S CLQS L G V + + VPS NV F
Sbjct: 194 KIWLLDKLLNRILFTLLNSDSL---VNTSASCLQSLLDGEKVYGTSDKDFYVPSKNVEYF 250
Query: 590 LE 585
E
Sbjct: 251 RE 252
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 327 VFGVQTAALSVLVHQVGDDGAGLPVERPSS 238
+FGV + L V + D GLP+ERP S
Sbjct: 432 LFGV-SRTLGVASQLIWDRALGLPIERPKS 460
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,007
Number of Sequences: 5004
Number of extensions: 58939
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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