Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20467
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0142 - 1093127-1093336,1093519-1093731,1093819-1093962,109... 31 0.85
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 31 0.85
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310... 31 1.5
11_02_0046 + 7711536-7711568,7711685-7711850,7712251-7712339,771... 29 3.4
03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937 29 3.4
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110 29 3.4
11_06_0225 + 21451966-21452036,21452127-21452200,21452342-21452436 29 4.5
10_06_0046 - 10051197-10051610 29 6.0
02_02_0405 + 9885202-9885415,9885515-9885861,9885941-9886516,988... 29 6.0
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 28 7.9
>12_01_0142 -
1093127-1093336,1093519-1093731,1093819-1093962,
1094202-1094312,1094935-1094956,1095457-1095701
Length = 314
Score = 31.5 bits (68), Expect = 0.85
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +3
Query: 450 REGTGSPSAAGQVPRRSEV-RAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETV 626
R G GSPSAA P + R+ L VA+L +V S+++S I+ A +K +
Sbjct: 48 RIGLGSPSAAAAAPMLGHLRRSSQRLPVANL----AVYSIQSSHIE-DDVAIIKHIQNST 102
Query: 627 KSTAPGYQEANEKGLEAFKGLVNSM 701
K G N E K LVN++
Sbjct: 103 KELKQGPVGKNLSSAEKRKFLVNTL 127
>01_07_0197 + 41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 31.5 bits (68), Expect = 0.85
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +1
Query: 82 LRSRLCALQGCTADGEGAQLKPEPQTGRPTPRGTAQTRIFEVEPSTHGPDPSRRWSFNWE 261
L S C L GC E + + P P+ + E++PS D W +W+
Sbjct: 1005 LDSEKCTLPGCGNHYEMQTPETRARPENPNPKWPVPKDLIELQPSYKQDD----WDPDWQ 1060
Query: 262 S--RAIITYLVNK 294
S + + YLVNK
Sbjct: 1061 STTSSKVAYLVNK 1073
>02_04_0267 -
21430370-21430474,21430559-21430618,21430937-21431046,
21431220-21431295,21431541-21431594,21431935-21432006,
21432088-21432173,21432694-21432750,21432886-21432991
Length = 241
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 176 GEQLKPEYLKLNPQHTVPTLVD 241
GE PE++K+NP VP LVD
Sbjct: 49 GEHSDPEFMKVNPMKFVPALVD 70
>11_02_0046 +
7711536-7711568,7711685-7711850,7712251-7712339,
7712443-7712514,7712807-7712860,7713000-7713075,
7713238-7713299,7713445-7713504,7713663-7713773
Length = 240
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 179 EQLKPEYLKLNPQHTVPTLVD 241
EQ PE+ KLNP VP LVD
Sbjct: 62 EQSHPEFEKLNPMKYVPALVD 82
>03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937
Length = 860
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 151 PQTGRPTPRGTAQTRIFEVEPSTHGP-DPSRRWSFNWESRAIITYL 285
P T P+PR + H P PS W+F+W+ +++ +L
Sbjct: 50 PSTPSPSPRPRTIVVANHLPIRAHRPASPSEPWTFSWDEDSLLRHL 95
>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
Length = 215
Score = 29.5 bits (63), Expect = 3.4
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +1
Query: 250 FNWESRAIITYLVNKYAKGSSLYPEDPKARVLVDQRLYFDIGTLYQRFSDYFY-----PQ 414
F WESRAI Y+ K K L D K +VD L + + + P
Sbjct: 64 FLWESRAICKYVCRK-NKPELLKDGDLKESAMVDVWLEVESNQYTPALNPILFQCLIRPM 122
Query: 415 VFAGAPADKAKNEKVQEALQLLDKFLE 495
+F GAP D+ + V+E L+ L K LE
Sbjct: 123 MF-GAPPDE---KVVEENLEKLKKVLE 145
>11_06_0225 + 21451966-21452036,21452127-21452200,21452342-21452436
Length = 79
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 179 EQLKPEYLKLNPQHTVPTLVD 241
E L PE+ K+NP VP +VD
Sbjct: 41 EHLSPEFKKINPMGQVPAIVD 61
>10_06_0046 - 10051197-10051610
Length = 137
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 103 LQGCTADGEGAQLKPEPQTGRPTP 174
++GCT + G Q+ P P T PTP
Sbjct: 21 VRGCTPNCSGEQVVPTPPTAVPTP 44
>02_02_0405 +
9885202-9885415,9885515-9885861,9885941-9886516,
9886599-9887003
Length = 513
Score = 28.7 bits (61), Expect = 6.0
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Frame = +3
Query: 429 PSRQGQEREGTGSPSAAGQVPRRSEVRAGPNLTVADLSLIASVSS-LEASDIDFKKYANV 605
P+RQ E T + Q RR P L D LI + + ++ S+ ++K +
Sbjct: 150 PTRQTAENGTTMEIMSTAQ--RRDLQMNVPALRKLDAMLIGYMDNFVDQSEFWYEKGGDN 207
Query: 606 KR-----WYETVKSTAPGYQEANEKGLEAFKGLVNSM 701
KR W TVK A G E K L+ K VN +
Sbjct: 208 KRDDDKWWMPTVKVPAEGLSEVTRKWLQYQKECVNQV 244
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 28.3 bits (60), Expect = 7.9
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +1
Query: 256 WESRAIITYLVNKY--AKGSSLYPEDPKARVLVDQRLYFDIGTLYQRFSDYFYPQVFAGA 429
+ESRAI Y++ KY +K L D + LVD + Y S + +
Sbjct: 66 FESRAIAKYILRKYKSSKVDLLRESDIREAALVDVWTEVEAHQYYPALSPIVFECIIFPI 125
Query: 430 PADKAKNEK-VQEALQLLDKFLE 495
N++ V E+L+ L K LE
Sbjct: 126 MRGVPTNQQVVHESLEKLKKVLE 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,349,747
Number of Sequences: 37544
Number of extensions: 428014
Number of successful extensions: 1399
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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