Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20467
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.030
SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)                      33   0.38 
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)                   29   4.6  
SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)                     28   8.1  
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   8.1  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 36.3 bits (80), Expect = 0.030
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 432 SRQGQEREGTGSPSAAGQVPRRSEVRAGPNLTVADLSLIASVSSLEASDIDFKK 593
           +R G E +G  + S   Q PR+S  R+ P+     ++ IAS       D DFKK
Sbjct: 155 TRSGAESDGGSTHSVTDQYPRKSRNRSAPSQISVVIANIASFEMTAEEDEDFKK 208


>SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)
          Length = 521

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 142 KPEPQTGRPTPRG-TAQTRIFEVEPSTHGPDP 234
           +PEP+T  P PR    +TR +  +P T+ PDP
Sbjct: 289 RPEPRTELPQPRTYRPETRTYRPDPRTYRPDP 320



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 142 KPEPQTGRPTPR-GTAQTRIFEVEPSTHGPDP 234
           +P P+T RP PR    Q R +  E  T+ PDP
Sbjct: 282 RPRPKTRRPEPRTELPQPRTYRPETRTYRPDP 313



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +1

Query: 142 KPEPQTGRPTPRGTAQTRIFEVEPSTH--GPDPSRRWSFNWESRAIITYLVN--KYAKGS 309
           +P+P+T +P P+ T       ++ S+H  G  PS   SFN E + +   LV   K     
Sbjct: 317 RPDPKTYQPWPQRTESPEDKYLKTSSHGGGDSPSTFESFNPEGKELSATLVPVLKTLAMP 376

Query: 310 SLYPEDPKARVLV 348
            L  ED K   L+
Sbjct: 377 ELKTEDDKLDYLI 389


>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -2

Query: 327 VFGVQTAALSVLVHQVGDDGAGLPVERPSSTRVGTVC*GFN 205
           +FGV + AL VL   V D   GLP+ERP S     +   FN
Sbjct: 337 LFGV-SRALGVLASLVWDRALGLPIERPKSVTTELLIKQFN 376


>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1720

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +1

Query: 166 PTPRGTAQTRI-----FEVEPSTHGPDPSRRWSFNWESRAIITYLV 288
           PTPR + QT +      E + +T GP    +WS  W   A+I  ++
Sbjct: 120 PTPRFSGQTSLPAKSTTEYQTATEGPGGISKWSITWIVIAVIVAIL 165


>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
          Length = 1029

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 289 NKYAKGSSLYPEDPKARVLVDQRLYFDIGTLYQRFSDYFYPQVFAGAPA 435
           N   + SSL  + P A +L  Q+LY  +  LYQ      YP  F G P+
Sbjct: 293 NGEVEKSSLPMDSPYALMLQQQQLYLQLQVLYQN-----YPCQFVGLPS 336


>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
          Length = 366

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 148 EPQTGRPTPRGTAQTRIFEVEPSTHGP 228
           EP+T R + R T Q  I E EP   GP
Sbjct: 208 EPKTRRTSRRRTKQEEIVEEEPKQEGP 234


>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1478

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +3

Query: 405 LSPSIRRCPSRQGQEREGTGSPSAAGQV 488
           +SP + + P+R+G++R+  G P A+ ++
Sbjct: 716 VSPGVPKTPARRGRKRKAEGDPKASYKI 743


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 408  SPSIRRCPSRQGQEREGTGSPSAAGQVPRRSEVRAGP 518
            SPS RR P  + + R    SPS   + PRR    A P
Sbjct: 1072 SPSPRRTPEDRRRSRGSRRSPSPPKREPRRRSPSASP 1108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,130,696
Number of Sequences: 59808
Number of extensions: 471007
Number of successful extensions: 1421
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)