Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20467
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        27   0.28 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        27   0.28 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        27   0.28 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   2.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 502 SDLRGTCPAAEGLPVPSRSWPCRLGHRRILGDRNNH*ISGTK-FRCRNTTVGQLGHE 335
           +D R  CP    +P+ + + PC    R   G   N+ ++  +  +   T +G+LG E
Sbjct: 280 ADYRYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEE 336


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 502 SDLRGTCPAAEGLPVPSRSWPCRLGHRRILGDRNNH*ISGTK-FRCRNTTVGQLGHE 335
           +D R  CP    +P+ + + PC    R   G   N+ ++  +  +   T +G+LG E
Sbjct: 280 ADYRYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEE 336


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 502 SDLRGTCPAAEGLPVPSRSWPCRLGHRRILGDRNNH*ISGTK-FRCRNTTVGQLGHE 335
           +D R  CP    +P+ + + PC    R   G   N+ ++  +  +   T +G+LG E
Sbjct: 280 ADYRYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEE 336


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -3

Query: 368 SKYNRWSTRTRALG--SSGYRLLPLAYLFTK*VMMARDSQLKDHRRLGSG 225
           SK N   T  + L    S   LLPL    T  VM A  +  KD +  GSG
Sbjct: 541 SKRNGGETNKQELKRLKSTVSLLPLPLARTPSVMSASSTCKKDKKNAGSG 590


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,443
Number of Sequences: 438
Number of extensions: 4290
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)