Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20464
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    94   2e-20
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    30   0.43 
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    29   0.76 
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    28   1.3  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    27   3.1  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   3.1  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    27   4.0  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   4.0  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    27   4.0  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    26   5.4  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   7.1  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   7.1  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   9.4  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   9.4  

>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
 Frame = +3

Query: 177 ESNCRWSPRSISSIK*GSNWYMCS---ASTGTHRSLCANLGAAQHFTPDHLQKEECKKSI 347
           ESN +   RS  S+   +   +C+   ++   +RSLC NLGAA ++    LQ+    K +
Sbjct: 92  ESNEKAGLRSEFSVDPTTPTGVCAVVLSNNNKNRSLCTNLGAANNYKLKDLQQPNVWKFV 151

Query: 348 EAAKFFYASGFFVAVSPESILLLAQHAHDNGHTFVMNLSAPFVSQFYKEPLEKL 509
           E AK  Y  GF + VSPES+L LAQHA++N   ++MNLSAPF+SQF+KE ++ +
Sbjct: 152 EEAKVIYVGGFHLTVSPESMLCLAQHANENNKPYIMNLSAPFLSQFFKEQMDSV 205



 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 39/85 (45%), Positives = 56/85 (65%)
 Frame = +2

Query: 509 LPYVDVLFGNESEADAFAKAFNINSSDVQEIALRIASMPKLNANRQRVVVITQGCQPVVL 688
           +PY D + GNE+E  ++ +   I S+DVQEIAL ++S+ K+N  R RVVVITQG    ++
Sbjct: 206 IPYCDYVIGNEAEILSYGENHGIKSTDVQEIALALSSVEKVNKKRTRVVVITQGADATIV 265

Query: 689 VQSGRVTLIPVEALPRERIIDTNGA 763
            + G+VT      +P E I+DTNGA
Sbjct: 266 AKDGKVTTYKPNRVPSEEIVDTNGA 290



 Score = 58.8 bits (136), Expect = 8e-10
 Identities = 28/67 (41%), Positives = 40/67 (59%)
 Frame = +1

Query: 55  YIAGGSVQNSLRVAQWILKKPNICTYFGCVGNDEYAKLLKERAIADGVHVQYQVSNEVAT 234
           Y AGG+ QNS R AQ++L  PN   + GCVG D++A +L E     G+  ++ V     T
Sbjct: 53  YSAGGAAQNSCRAAQYVLP-PNSTVFAGCVGQDKFADMLLESNEKAGLRSEFSVDPTTPT 111

Query: 235 GTCAVLV 255
           G CAV++
Sbjct: 112 GVCAVVL 118


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = -2

Query: 571 ECLRESVCLRFIPEEHVDIWESFSSGSL*NCETKGALKFITNVCP 437
           EC R   C  F   E +D W + S  S   C TKG     T   P
Sbjct: 537 ECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRTKGVASASTPSSP 581


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 405 ILLLAQHAHDNGHTFVMNLSAPFVSQFYKEPLEKLSHMSTCSSGMNRRQTLSRRHST 575
           +LLL     D  HT+ +N+ A  + +FY      L++    +  ++ R +LSRR  T
Sbjct: 136 VLLLCDGCDDAYHTYCLNMDAVPIEEFYCPNCVLLNYQE--NETLSSRISLSRRGQT 190


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 76  QNSLRVAQWILKKPNICTYFGCVGNDEYAKLLKERAIADGVHV 204
           +N+L    +I+KK  +  Y GC G + Y+     R +  G  +
Sbjct: 187 RNALTPLDFIMKKNELMKYIGCFGVEAYSTASGTRTLQAGERI 229


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 48  CRVYCWWKRSEFIKSSTMDSKETKYLYLLWLC 143
           CRVYC+  R+  +K    D          W+C
Sbjct: 44  CRVYCYLSRNGLLKRPKEDDSSANAQVKNWVC 75


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 444  YVHYRAHAGPITISTLEKLPQRNQKHKRTS 355
            +  YR H G +  S   K P  N  HKR S
Sbjct: 1016 FTKYRNHFGNLMTSEETKAPDNNDLHKRLS 1045


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 48  CRVYCWWKRSEFIKSSTMDSKET 116
           C++Y W   S+ +++ST+ SKET
Sbjct: 175 CKIYDWVAGSKNLRASTIFSKET 197


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 517 IWESFSSGSL*NCETKGALKFITNVCPLSCACWANNNIDS 398
           +W +FS  S    E K AL+ I N C  S   +A++ +DS
Sbjct: 66  VWAAFSEASC--SERKLALQGILNNCSSSLLSFASSTLDS 103


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/67 (20%), Positives = 34/67 (50%)
 Frame = -3

Query: 537 FPKSTSTYGRVSRAVPYRTVRQRAHSSS*QTYVHYRAHAGPITISTLEKLPQRNQKHKRT 358
           FP S S YG+   A+ Y T+++ +     + ++    H G +   + +++  ++ + K+ 
Sbjct: 151 FPSSQSAYGQSKAALNY-TMKEISFELQDEGFIVISIHPGAVRTDSAQEIVNQHAE-KKP 208

Query: 357 SLLQCFS 337
            +L  F+
Sbjct: 209 EILDLFA 215


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
 Frame = -3

Query: 630 NLGMLAIRKAISCTSLEFMLNAFAKASASDS--FPKSTSTYGRVSRAVPYRTVRQRAHSS 457
           N+ + A+    S TS    LN   + ++ +   FPK        S  + Y T  Q + +S
Sbjct: 211 NVDIPALSMLTSQTSSSSTLNLPPEPASREVKIFPKQGKRIFSPSTGIDYETTGQHSVNS 270

Query: 456 S*QTYVHYRAHAGPITISTLEKLPQRNQ 373
              TY H R+        +  + P++N+
Sbjct: 271 PPSTYKHRRSLNKSFATRSEPQTPRKNK 298


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 58   IAGGSVQNSLRVAQWILKKPNICTYF-GCVGN 150
            + GG+V  S R+   ILK  +IC    GC+ N
Sbjct: 1067 VVGGNVLTSQRITDVILKAFSICAASQGCMNN 1098


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 572 NINSSDVQEIALRIASMPKLNANRQRVVVITQGCQPVVLVQSGRVTLIPVEALPRERIID 751
           NI+S+ +Q+      +   LNA          GC P     SG+V L+P E   R  I++
Sbjct: 38  NIDSNGLQQTNQIEQAESSLNAEADHSEPERYGCTP-----SGKVFLLPKEQENRRSILE 92

Query: 752 T 754
           T
Sbjct: 93  T 93


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 198 PRSISSIK*GSN-WYMCSASTGTHRSLCANLGAAQHFTPDHLQKEECKKSIE 350
           P    S+K   N  Y  + ++GT   L  +L   Q+FT + L+ E  + S E
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRFSFE 604


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 437  WTYVCYELECALCLTVL*GTARETLPYVDVLFGNESEADAFAKA 568
            W  + + + CAL + ++    R TL   D     E E DAF ++
Sbjct: 1491 WLTMLFVMVCALTIDIVAQMLRRTLRPTDTDIFVEMENDAFVRS 1534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,346,267
Number of Sequences: 5004
Number of extensions: 68961
Number of successful extensions: 223
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)