Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20464
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0520 - 25871932-25872074,25872234-25872294,25873267-258733... 98 6e-21
02_05_0012 - 24959542-24959684,24960132-24960192,24960995-249611... 97 1e-20
08_02_1628 + 28363476-28363517,28363624-28363791,28363863-283639... 33 0.34
01_06_0922 - 33022709-33023545 31 1.0
04_03_0852 + 20289439-20289721,20289858-20290642 29 3.2
07_03_1510 + 27264999-27265371,27265485-27265546,27265768-272664... 29 5.6
06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772... 29 5.6
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 29 5.6
03_06_0148 + 31982976-31984097 28 7.4
04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834 28 9.7
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543... 28 9.7
02_05_0713 + 31159574-31160764 28 9.7
>04_04_0520 -
25871932-25872074,25872234-25872294,25873267-25873389,
25873465-25873531,25873710-25873780,25873853-25874004,
25874082-25874158,25874323-25874435,25874503-25874598,
25874703-25874734,25874838-25874884,25875015-25875068,
25875212-25875289,25875607-25875698
Length = 401
Score = 98.3 bits (234), Expect = 6e-21
Identities = 42/87 (48%), Positives = 60/87 (68%)
Frame = +2
Query: 503 ETLPYVDVLFGNESEADAFAKAFNINSSDVQEIALRIASMPKLNANRQRVVVITQGCQPV 682
+ LPY D +FGNE+EA FAK + + +EIAL+I+ +PK + +R+ VITQGC PV
Sbjct: 268 KALPYADYIFGNETEARTFAKVRGWETENTEEIALKISQLPKASGAHKRITVITQGCDPV 327
Query: 683 VLVQSGRVTLIPVEALPRERIIDTNGA 763
V+ G+V PV LP+E+++DTNGA
Sbjct: 328 VVADDGKVKTFPVIVLPKEKLVDTNGA 354
Score = 85.4 bits (202), Expect = 5e-17
Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 13/97 (13%)
Frame = +1
Query: 7 EHMPLYSELVDKYNAEYIAGGSVQNSLRVAQWILKKPNICTYFGCVGNDEYAKLLKERAI 186
+H+P+Y+EL K N EYIAGGS QNS+RVAQW+L+ P +Y GC+G D++ + +K+ A
Sbjct: 71 KHLPMYNELASKVNVEYIAGGSTQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKDAQ 130
Query: 187 ADGVH-------------VQYQVSNEVATGTCAVLVL 258
G+H Y + TGTCAV ++
Sbjct: 131 TAGLHHCTYCLDLTIFKQAHYYEDDNAPTGTCAVCIV 167
Score = 67.7 bits (158), Expect = 1e-11
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 18/101 (17%)
Frame = +3
Query: 258 GTHRSLCANLGAAQHFTPDHLQKEE---------------CKKS---IEAAKFFYASGFF 383
G RSL ANL AA + +HL++ E +S +E AK+ Y +GFF
Sbjct: 168 GGERSLVANLSAANCYRSEHLKRPENWTLVYVFHLIAFLTIIRSLIVVEKAKYIYIAGFF 227
Query: 384 VAVSPESILLLAQHAHDNGHTFVMNLSAPFVSQFYKEPLEK 506
+ VSP+SI L+A+HA F+MNLSAPF+ +F+++ EK
Sbjct: 228 LTVSPDSIQLVAEHAAATNKVFMMNLSAPFICEFFRDAQEK 268
>02_05_0012 -
24959542-24959684,24960132-24960192,24960995-24961117,
24961196-24961262,24961510-24961580,24961650-24961747,
24962279-24962355,24963568-24963635,24963754-24963855,
24963945-24963976,24964066-24964112,24964263-24964316,
24964952-24965034
Length = 341
Score = 97.1 bits (231), Expect = 1e-20
Identities = 41/84 (48%), Positives = 56/84 (66%)
Frame = +1
Query: 7 EHMPLYSELVDKYNAEYIAGGSVQNSLRVAQWILKKPNICTYFGCVGNDEYAKLLKERAI 186
+H+P+Y EL K N EYIAGG+ QNS+RVAQW+L+ P +Y GC+G D++ + +K+ A
Sbjct: 42 KHLPMYDELASKGNVEYIAGGATQNSIRVAQWMLQTPGATSYMGCIGKDKFGEEMKKNAQ 101
Query: 187 ADGVHVQYQVSNEVATGTCAVLVL 258
A GV Y TGTCAV V+
Sbjct: 102 AAGVTAHYYEDEAAPTGTCAVCVV 125
Score = 94.3 bits (224), Expect = 1e-19
Identities = 41/87 (47%), Positives = 62/87 (71%)
Frame = +2
Query: 503 ETLPYVDVLFGNESEADAFAKAFNINSSDVQEIALRIASMPKLNANRQRVVVITQGCQPV 682
+ LP+VD +FGNE+EA FAK + +V+EIAL+I+ +P + ++R+ VITQG PV
Sbjct: 208 KVLPFVDYIFGNETEARIFAKVRGWETENVEEIALKISQLPLASGKQKRIAVITQGADPV 267
Query: 683 VLVQSGRVTLIPVEALPRERIIDTNGA 763
V+ + G+V PV LP+E+++DTNGA
Sbjct: 268 VVAEDGQVKTFPVILLPKEKLVDTNGA 294
Score = 89.0 bits (211), Expect = 4e-18
Identities = 41/84 (48%), Positives = 58/84 (69%)
Frame = +3
Query: 258 GTHRSLCANLGAAQHFTPDHLQKEECKKSIEAAKFFYASGFFVAVSPESILLLAQHAHDN 437
G RSL ANL AA + +HL+K E +E AK+ Y +GFF+ VSP+SI L+A+HA N
Sbjct: 126 GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYIYIAGFFLTVSPDSIQLVAEHAAAN 185
Query: 438 GHTFVMNLSAPFVSQFYKEPLEKL 509
F+MNLSAPF+ +F+++ EK+
Sbjct: 186 NKVFLMNLSAPFICEFFRDAQEKV 209
>08_02_1628 +
28363476-28363517,28363624-28363791,28363863-28363937,
28364018-28364070,28364559-28364709,28365079-28365261,
28366110-28366236,28366731-28366831,28367156-28367294,
28367359-28367420,28367702-28367754,28368266-28368290
Length = 392
Score = 32.7 bits (71), Expect = 0.34
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = +2
Query: 542 SEADAFAKAFNINSSDVQEIALRIASMPKLNANRQRVVVITQGCQPVVLVQSGRVTLIPV 721
SEA+ + S + +E+ +SMPK A++ + + G + SGR+ L
Sbjct: 269 SEAEEIDVESLLESLEKKEVLS--SSMPKCIASKSNLRISADGIGSI----SGRLLLGTA 322
Query: 722 EALPRERIIDTNGA 763
E +P E +IDT GA
Sbjct: 323 EIIPSEELIDTTGA 336
>01_06_0922 - 33022709-33023545
Length = 278
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -1
Query: 701 VRSVPARRVGSPA**PRRADGSRSIWACWR-SVKRSPAHRSNLC*MPSRKRLPPIHSRRA 525
VRS AR SP PRR RS+ + KR+P R PS +R PP+ R +
Sbjct: 157 VRSRSARASASPP--PRREQRDRSVRRSPSPAAKRTPEQRRAASPAPSLQRKPPVPVRPS 214
Query: 524 RRHMGE 507
R + E
Sbjct: 215 PRRVQE 220
>04_03_0852 + 20289439-20289721,20289858-20290642
Length = 355
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 439 PLSCACWANNNIDSGETATKKPEA*KNFAASMLFLHSSFCK 317
P +C+ NN SG T +P A M ++H CK
Sbjct: 51 PTVASCYNQNNTASGPDCTVEPRACPRGCRDMCYVHCPTCK 91
>07_03_1510 +
27264999-27265371,27265485-27265546,27265768-27266436,
27266842-27267288
Length = 516
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 722 EALPRERIIDTNGAEMPLLVG 784
+AL ERIID GAE+ +L+G
Sbjct: 366 QALVLERIIDAEGAELEILIG 386
>06_03_0723 + 23875008-23875204,23875311-23875576,23877166-23877274,
23877577-23878212,23878328-23878573,23878669-23878834,
23878863-23879076,23879580-23880097,23880617-23880683,
23882131-23882215,23882292-23882367,23882593-23882756,
23883088-23883217,23883314-23883430,23883505-23883600,
23883732-23884009,23886571-23886794,23886935-23887011,
23887103-23887145,23887231-23887288,23888371-23888410,
23888891-23889418
Length = 1444
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +3
Query: 237 YMCSASTGTHRSLCANLGAAQHFTPDHLQKEECKKSIEAAKFFYASGFFVAVSP 398
++C +G HRSL ++ T D +E +E YA+ + A P
Sbjct: 842 FICLKCSGIHRSLGTHISKVLSVTLDEWTDDEINSMLEVGGNSYANAIYEAFLP 895
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 28.7 bits (61), Expect = 5.6
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 312 DHLQKEECKKSIEAAKFFYASGFFVAVSPESILLLAQHAHDNGHTFVMNLSAPFV---SQ 482
D ++ E K + + YA+GFF + LL + A +G FV S+
Sbjct: 359 DKMEFELWKNGLPEKEQKYATGFFTVIKRHDALLPSILAQSDGSNQTKTSDDLFVVPYSE 418
Query: 483 FYKEPLEKLSHM----STCSSGMNRRQTLSRR 566
YK LEK + + S CS + + L +
Sbjct: 419 EYKSSLEKAAELLHKASECSDSPSLKNLLKTK 450
>03_06_0148 + 31982976-31984097
Length = 373
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 613 RQHAQIEREPSARRGHHAGLPTRRAGTERTSHPDTG 720
R+H + PS RRGH LP RR G R G
Sbjct: 223 RRHGAVLGAPSPRRGHL--LPARRRGVRRDDGATAG 256
>04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834
Length = 253
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 671 CQPVVLVQSGRVTLIPVEALPRERIIDTNGAEMPLLV 781
C VL++S R + + + IDTNG +P++V
Sbjct: 103 CSYAVLMESSRFSFRRSYVMNSSQFIDTNGGRVPMVV 139
>04_03_0535 - 16850704-16853001,16854055-16854115,16854228-16854323,
16854394-16854521,16855016-16855067,16855182-16855274,
16855473-16855590,16856456-16856609,16857512-16857643,
16859136-16859216,16859353-16859507,16860118-16860343,
16860423-16860507,16860593-16860689,16861785-16861949,
16862046-16862121,16863041-16863103,16863193-16863359,
16863495-16863669,16863743-16863835,16864694-16864810,
16865589-16865778,16866092-16866126
Length = 1618
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 532 EEHVDIWESFSSGSL*NCETKGALKFITNVCPLSCACWAN 413
E + W S SG + N ++ ALK +C LS C A+
Sbjct: 1274 ERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSIECSAS 1313
>02_05_0713 + 31159574-31160764
Length = 396
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 655 GHHAGLPTRRAGTERTSHPDTGRGFAEGTY 744
G+ AG+ +R G +S DT R F+ GTY
Sbjct: 270 GNAAGIVSREPGESSSSSLDTRRCFSMGTY 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,380,513
Number of Sequences: 37544
Number of extensions: 482641
Number of successful extensions: 1325
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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