Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20464
(788 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15351| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 5e-19
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11) 29 4.3
SB_1354| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_50016| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_36314| Best HMM Match : DUF845 (HMM E-Value=0.95) 29 5.7
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0) 28 7.5
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18) 28 9.9
>SB_15351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 800
Score = 91.9 bits (218), Expect = 5e-19
Identities = 42/82 (51%), Positives = 56/82 (68%)
Frame = +3
Query: 255 TGTHRSLCANLGAAQHFTPDHLQKEECKKSIEAAKFFYASGFFVAVSPESILLLAQHAHD 434
TG HRSL ANL AA ++T HL + E + A FFY GFF+ VSPESI+ + ++A +
Sbjct: 559 TGKHRSLVANLAAANNYTKSHLDQPENWALVVKANFFYIGGFFLTVSPESIVAVGKYAAE 618
Query: 435 NGHTFVMNLSAPFVSQFYKEPL 500
F+MNLSAPF+ QF+KEP+
Sbjct: 619 TDKLFMMNLSAPFLCQFFKEPM 640
Score = 68.9 bits (161), Expect = 4e-12
Identities = 35/85 (41%), Positives = 52/85 (61%)
Frame = +2
Query: 509 LPYVDVLFGNESEADAFAKAFNINSSDVQEIALRIASMPKLNANRQRVVVITQGCQPVVL 688
+PY+D+LFGNE+ + D++EI L+++ + K+N R R VVIT G +P ++
Sbjct: 644 MPYIDILFGNET------------TEDLKEIILKMSKLTKVNEKRSRTVVITHGKKPTLV 691
Query: 689 VQSGRVTLIPVEALPRERIIDTNGA 763
Q G V PV A+ E I+DTNGA
Sbjct: 692 AQDGEVREFPVIAIKEEDIVDTNGA 716
Score = 45.6 bits (103), Expect = 5e-05
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 142 VGNDEYAKLLKERAIADGVHVQYQVSNEVATGTCAVLVL-VHTAHCAPISVLHNTSHQII 318
+G D + K L + A A GVHV Y ++ E+ TGTCAV + H + A ++ +N + +
Sbjct: 521 IGEDAFGKTLTDIATAAGVHVNYLINKEIPTGTCAVCITGKHRSLVANLAAANNYTKSHL 580
Query: 319 YRKKN 333
+ +N
Sbjct: 581 DQPEN 585
Score = 41.9 bits (94), Expect = 6e-04
Identities = 14/26 (53%), Positives = 22/26 (84%)
Frame = +1
Query: 22 YSELVDKYNAEYIAGGSVQNSLRVAQ 99
Y E++DK+N +Y+ GG+ QNS+R+AQ
Sbjct: 44 YQEMIDKFNVDYLPGGATQNSIRIAQ 69
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +2
Query: 494 TARETLPYVDVLFGNESEADAFAKAFNINSSDVQEIALRIASMPKLNANRQRVVVITQGC 673
TAR +P VDV F A+ + F+ + EI + K + +R R ++T G
Sbjct: 5213 TARPPIPQVDVAFAISVSANNAERTFDRMKMTISEI------ISKYDTSRLRYAIVTFGR 5266
Query: 674 QPVVLVQSG 700
P ++ G
Sbjct: 5267 NPATVLYFG 5275
>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
Length = 1771
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/80 (30%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Frame = +2
Query: 257 WYTPLTVRQSR-CCTTLHTRSFTERRMQEKH*SSEVLLCFWFLCGSFSRVDIVIGPACAR 433
W P R L R F + + SSE CFW C S + P+ R
Sbjct: 529 WENPRLAEAPRPAFQNLSPRLFRSLNNRARAFSSEA--CFWVTCSSH-----FLPPSAVR 581
Query: 434 *WTYVCYELECALCLTVL*G 493
W C L C L T L G
Sbjct: 582 YWAKACAVLTCLLGTTWLLG 601
>SB_1354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 243 CSASTGTH-RSLCANLGAAQHFTPDHLQKEECKKSIEAAKFFYASGF 380
C G H RS+C N + Q TP ++ E +++ EA+ SGF
Sbjct: 24 CKGCAGAHHRSICENQASGQTETPQQ-ERGESEQAGEASSNHVTSGF 69
>SB_50016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2065
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -2
Query: 727 SLDRYQGDSSALYQHDGLAALRDDHDALTVRVQFG 623
+L + Q +S +YQHDG R D+LTVRV G
Sbjct: 258 TLTQLQKSASIVYQHDGSETTR---DSLTVRVTDG 289
>SB_36314| Best HMM Match : DUF845 (HMM E-Value=0.95)
Length = 248
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 533 GNESEADAFAKAFNINSSDVQEIALRIASMPKLNANRQRVVVITQGCQPVVLVQSGRVTL 712
GN S + F NI S+ + ++++ + K N N +V C + V +G V L
Sbjct: 164 GNSSVEEVFGDDMNITLSEELDKSVKLVQVVKYNTN----IVANTNCSQIKTVLNGTVVL 219
Query: 713 I 715
+
Sbjct: 220 M 220
>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
Length = 1595
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 521 DVLFGNESEADAFAKAFNINSSDVQE 598
DV FGN SE + A +F++NSS ++E
Sbjct: 1099 DVTFGNFSECFSSAWSFSVNSSLIKE 1124
>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
Length = 458
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -2
Query: 577 YVECLRESVCLRFIPEEHVDIW--ESFSSGSL*NCETKGALKFITNVCPLSCACWANNNI 404
+V+CL S + +PE D W E+ +C G N CP+ C+++N+
Sbjct: 227 HVDCLGPSYPV--VPEGSEDTWDPEAVWMHEFTHCYDCGTAWDNGNYCPICEKCYSDNDF 284
Query: 403 DS 398
DS
Sbjct: 285 DS 286
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,966,388
Number of Sequences: 59808
Number of extensions: 554891
Number of successful extensions: 1612
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1608
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -