Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20462
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936...    31   0.50 
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    30   1.2  
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           29   2.0  
08_01_0679 - 5933187-5933258,5933378-5933592,5934527-5934569           27   8.2  

>06_01_1133 +
           9364842-9364850,9364929-9365048,9365157-9365476,
           9366267-9366428,9367151-9367235,9367352-9367501,
           9367588-9367635,9367705-9367773,9367897-9368600,
           9369426-9369561,9369636-9369856,9370355-9370486,
           9371316-9371406,9371878-9371925,9372004-9372132,
           9372357-9372626
          Length = 897

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 139 CVSQNTGTCPESSCACPEISCACPETSCACPESSC 243
           C     GTC E  C CP++ C      C C +S C
Sbjct: 661 CPCLTNGTCCEKYCGCPKM-CKNRFRGCHCAKSQC 694


>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 139 CVSQNTGTCPESSCACPEISCACPETSCACPESSC 243
           C     GTC E  C C + SC      C C +S C
Sbjct: 464 CACVENGTCCEKYCGCSK-SCKNRFRGCHCAKSQC 497


>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 142 VSQNTGTCPESSCACPEISCACPETSCA 225
           ++++  TCP + C CPE  C     S A
Sbjct: 116 ITEHEKTCPHAPCFCPEPGCGFAAASAA 143


>08_01_0679 - 5933187-5933258,5933378-5933592,5934527-5934569
          Length = 109

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 145 SQNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
           S +T T  +   A   I   C  T+C CP  S LCPQ
Sbjct: 21  SSSTATA-QPPVATAAIHFQCASTACRCPHLS-LCPQ 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,652,472
Number of Sequences: 37544
Number of extensions: 80378
Number of successful extensions: 341
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)