Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20462
(579 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.29
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 30 1.2
SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9) 30 1.6
SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_20444| Best HMM Match : F-box (HMM E-Value=5.2) 29 2.7
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22) 28 4.8
SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23) 28 6.3
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17) 28 6.3
SB_7889| Best HMM Match : VWC (HMM E-Value=2.6) 28 6.3
SB_51094| Best HMM Match : VWA (HMM E-Value=0) 25 7.9
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35) 25 8.4
>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 136 TCVSQNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
T T P+++ A P+ + A PE + A PE++ P+
Sbjct: 26 TAAPMETTAAPDATTAAPDATTAAPEATTAAPEATTAAPE 65
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 136 TCVSQNTGTCPESSCACPEISCACPETSCACPESSCLCP 252
T T P+++ A PE + A PE + A PE++ P
Sbjct: 33 TAAPDATTAAPDATTAAPEATTAAPEATTAAPEATTAAP 71
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 136 TCVSQNTGTCPESSCACPEISCACPETSCACPESSCLCP 252
T T PE++ A PE + A PE + A P + P
Sbjct: 40 TAAPDATTAAPEATTAAPEATTAAPEATTAAPVETTAGP 78
>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 30.7 bits (66), Expect = 0.90
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ T PE + A PE + PE + CPE + P+
Sbjct: 84 EGNSTSPEGNSASPEGNSTSPEGNSTCPEGNSTSPE 119
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ T PE + A PE + A PE + A PE + P+
Sbjct: 133 EGNSTSPEGNSASPEGNSASPEGNSASPEGNSTSPE 168
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ T PE + CPE + PE + PE + P+
Sbjct: 98 EGNSTSPEGNSTCPEGNSTSPEGNSTSPEGNSTSPE 133
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ TCPE + PE + PE + PE + P+
Sbjct: 105 EGNSTCPEGNSTSPEGNSTSPEGNSTSPEGNSTSPE 140
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 145 SQNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
++ T PE + A PE + PE + A PE + P+
Sbjct: 69 TEGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 105
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ PE + PE + A PE + PE + CP+
Sbjct: 77 EGNSASPEGNSTSPEGNSASPEGNSTSPEGNSTCPE 112
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ T PE + A PE + PE + A PE + P+
Sbjct: 10 EGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 45
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ T PE + PE + A PE + A PE + P+
Sbjct: 126 EGNSTSPEGNSTSPEGNSASPEGNSASPEGNSASPE 161
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ T PE + A PE + PE + A PE + P+
Sbjct: 196 EGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 231
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 148 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 255
+ T PE + A PE + PE + A PE + P+
Sbjct: 210 EGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 245
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 139 CVSQNTGTCPESSCACPEISCACPETSCACPESSCLCP 252
C++ N C + + C + + C S CP+ S LCP
Sbjct: 991 CLNDNV-MCLKDNVMCSKDAVTCQNRSVTCPKYSVLCP 1027
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 139 CVSQNTGTCPESSCACPEISCACPETSCACPESS 240
C+ N C + + C S CP+ S CP+S+
Sbjct: 998 CLKDNV-MCSKDAVTCQNRSVTCPKYSVLCPDSN 1030
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 145 SQNTGTCPESSCACPEISCACPETSCACPESS 240
S++ TC S CP+ S CP+++ E+S
Sbjct: 1006 SKDAVTCQNRSVTCPKYSVLCPDSNVEPNETS 1037
>SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9)
Length = 117
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 163 CPESSCACPEISCACPETSCACPESSCLCP 252
CP + ACP CP T CP + CP
Sbjct: 4 CPLTLLACPLTLFTCPLTPFTCPLTPFTCP 33
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 160 TCPESSCACPEISCACPETSCACPESSCLCP 252
TCP + CP CP T CP CP
Sbjct: 24 TCPLTPFTCPLPPFTCPLTLLTCPLDMLSCP 54
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +1
Query: 160 TCPESSCACPEISCACPETSCACPESSCLCP 252
TCP + CP CP CP + CP
Sbjct: 17 TCPLTPFTCPLTPFTCPLPPFTCPLTLLTCP 47
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +1
Query: 163 CPESSCACPEISCACPETSCACPESSCLCP 252
CP + CP CP T CP CP
Sbjct: 11 CPLTLFTCPLTPFTCPLTPFTCPLPPFTCP 40
>SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 139 CVSQNTGTCPESSCACPEISCACPETSC 222
CVS P + ACP ++ AC SC
Sbjct: 80 CVSYRYDRVPYLTSACPNVTSACQRVSC 107
>SB_20444| Best HMM Match : F-box (HMM E-Value=5.2)
Length = 332
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +1
Query: 163 CPESSCACPEISCACPETSCACPESSCLCP 252
CP + P C CP P CLCP
Sbjct: 60 CPSAFALLPLPYCLCPNAFALLPLPYCLCP 89
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +1
Query: 163 CPESSCACPEISCACPETSCACPESSCLCP 252
CP + P C CP P CLCP
Sbjct: 74 CPNAFALLPLPYCLCPSAFALLPLPYCLCP 103
>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
Length = 1421
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 139 CVSQNTGTCPESSCACPEISCACPETSCAC 228
C +TG P ++C C I P+T+C C
Sbjct: 892 CCLMDTGL-PHTACQCCLIGTGLPQTACQC 920
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = +1
Query: 139 CVSQNTGTCPESSCACPEISCACPETSCAC-------PESSCLC 249
C +TG P ++C C I P T+C C P ++C C
Sbjct: 962 CRLMDTGL-PHTACQCRLIDTGLPHTACQCRLMDTGIPHTACQC 1004
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = +1
Query: 139 CVSQNTGTCPESSCACPEISCACPETSCAC-------PESSCLC 249
C +TG P ++C C I P T+C C P ++C C
Sbjct: 1004 CRLMDTGL-PHTACQCRLIDTGLPHTACQCRLMDTGLPHTACQC 1046
>SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)
Length = 1250
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Frame = +1
Query: 136 TCVSQNTGTCPES-----SCACPEISCACPETSCACPESSCLCPQ 255
T V N GTC + SC C P SC P C C Q
Sbjct: 40 TTVESNGGTCTYALNETKSCGSDNGGCTGPGASCDEPTGVCSCNQ 84
>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
Length = 1440
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +1
Query: 163 CPESSCACPEISCACPETSCACPESSCLCPQ 255
C CA + CA P CA P C P+
Sbjct: 830 CTSVICAISHVICAIPCMMCAIPRVICAIPR 860
>SB_7889| Best HMM Match : VWC (HMM E-Value=2.6)
Length = 203
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 163 CPESSCACPEISCACPETSCACPESSCLC 249
CP+ CPE A PES+C C
Sbjct: 31 CPQMMIKCPENQRVAYHEGPAVPESTCTC 59
>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
Length = 3544
Score = 24.6 bits (51), Expect(2) = 7.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 148 QNTGTCPESSCACP 189
Q+ G C ES C CP
Sbjct: 1524 QHGGVCTESGCMCP 1537
Score = 21.0 bits (42), Expect(2) = 7.9
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = +1
Query: 205 CPETSCACPES 237
C E+ C CP S
Sbjct: 1529 CTESGCMCPSS 1539
>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
Length = 1686
Score = 24.6 bits (51), Expect(2) = 8.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 148 QNTGTCPESSCACP 189
Q+ G C ES C CP
Sbjct: 1266 QHGGVCTESGCMCP 1279
Score = 21.0 bits (42), Expect(2) = 8.4
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = +1
Query: 205 CPETSCACPES 237
C E+ C CP S
Sbjct: 1271 CTESGCMCPSS 1281
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,304,669
Number of Sequences: 59808
Number of extensions: 92704
Number of successful extensions: 538
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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