Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20456
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0183 - 21681673-21682524                                         33   0.19 
12_01_0941 - 9316051-9316056,9316747-9317082                           29   3.1  
12_01_0935 - 9277421-9277584,9277908-9278111,9280742-9280982,928...    29   3.1  
03_05_0180 + 21593763-21594605                                         29   3.1  
03_05_0179 - 21583234-21584336,21586274-21586358,21586665-215867...    29   3.1  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   4.0  
05_03_0198 + 9612767-9613243                                           29   5.3  
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417...    28   9.3  

>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 174 SQAFIATLLFDPSMSALPIIAKQNSPSLDCSPIKRERELGLDRRETG 314
           SQAF A LL D + +A+P++  Q  P+ + +  + E E    RR TG
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPAPE-TETETEEEPPRQRRRTG 274


>12_01_0941 - 9316051-9316056,9316747-9317082
          Length = 113

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 471 ASLAESGKDMLTVSPESREALNNVTLLVAFRIQNARRHVEAHLDRGD 611
           ASLAE     + + PE    ++ + +L+AF+ Q AR  +EA LD  D
Sbjct: 24  ASLAEGHPTFVLLRPEIGLNIDKLQILLAFKAQGARL-LEASLDDHD 69


>12_01_0935 -
           9277421-9277584,9277908-9278111,9280742-9280982,
           9282165-9282494
          Length = 312

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 471 ASLAESGKDMLTVSPESREALNNVTLLVAFRIQNARRHVEAHLDRGD 611
           ASLAE     + + PE    ++ + +L+AF+ Q AR  +EA LD  D
Sbjct: 22  ASLAEGHPTFVLLRPEIGLDIDKLQILLAFKAQGARL-LEASLDDHD 67


>03_05_0180 + 21593763-21594605
          Length = 280

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 174 SQAFIATLLFDPSMSALPIIAKQNSPSLDCSPIKRERELGLDRRETG 314
           SQAF A LL D + +A P++     P+ +    ++++E    RR TG
Sbjct: 229 SQAFSAVLLADANRAASPVVVVHKRPTPETEK-EQDQEPPRQRRRTG 274


>03_05_0179 - 21583234-21584336,21586274-21586358,21586665-21586713,
            21586801-21586874,21586958-21587050,21587120-21587174,
            21587348-21587421,21587702-21587814,21587911-21588168,
            21588915-21589012,21589139-21589256,21589754-21589848,
            21590001-21590159,21590336-21590525,21590881-21591021,
            21591142-21591176,21591659-21591699
          Length = 926

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 174  SQAFIATLLFDPSMSALPIIAKQNSPSLDCSPIKRERELGLDRRETG 314
            SQAF A LL D + +A P++     P+ +    ++++E    RR TG
Sbjct: 875  SQAFSAVLLADANRAASPVVVVHKRPTPETEK-EQDQEPPRQRRRTG 920


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 113 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 220
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>05_03_0198 + 9612767-9613243
          Length = 158

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 538 LFRASRLSGLTVSISLPDSARLASALEAFRHNPADGSSHHR 416
           LF  +++ GL   +SLP SA   SA     H  A  S+H R
Sbjct: 117 LFSETQIFGLPTHLSLPTSAHHRSAAWHHSHKAAATSNHGR 157


>03_05_0520 +
           25139314-25139364,25139580-25139711,25141594-25141731,
           25143191-25143241,25143662-25143751,25143854-25144000,
           25144108-25144218,25144307-25144375,25144777-25145517,
           25145840-25146004,25146376-25146442,25146580-25146704,
           25148714-25148983,25149065-25149199,25149316-25149497,
           25149669-25149744
          Length = 849

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +2

Query: 338 VVAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL*GRSQPSRI 487
           VV   I  ST   +VS    + S  RP+V TT   ++P  +  RS P  I
Sbjct: 308 VVPTTISTSTAAVSVS-AETISSPVRPIVPTTTAAVLPASVTARSAPENI 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,956,890
Number of Sequences: 37544
Number of extensions: 469058
Number of successful extensions: 1233
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)