Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20456
         (763 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF160940-1|AAD46880.1| 1260|Drosophila melanogaster BcDNA.LD1916...    31   2.3  
AE014297-55|AAF52146.1| 1260|Drosophila melanogaster CG9776-PA, ...    31   2.3  
AE014296-2411|AAF49717.2| 1333|Drosophila melanogaster CG17177-P...    30   4.0  

>AF160940-1|AAD46880.1| 1260|Drosophila melanogaster BcDNA.LD19168
           protein.
          Length = 1260

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +2

Query: 488 RQGYAHCEPRESGGSKQCDFTSR---VSHSKRETARRSPFGS-RRSMLSVFFLTRASRLR 655
           + G  +CEPR SG  K+    SR    S  + ++   SP  + RR  LS        R  
Sbjct: 33  KSGNENCEPRSSGSGKRGKSNSRRRSTSRGRSDSRNTSPSNTRRRHSLSRSLTPPRRRYD 92

Query: 656 SPDITQF 676
           SPD  ++
Sbjct: 93  SPDYGRY 99


>AE014297-55|AAF52146.1| 1260|Drosophila melanogaster CG9776-PA,
           isoform A protein.
          Length = 1260

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +2

Query: 488 RQGYAHCEPRESGGSKQCDFTSR---VSHSKRETARRSPFGS-RRSMLSVFFLTRASRLR 655
           + G  +CEPR SG  K+    SR    S  + ++   SP  + RR  LS        R  
Sbjct: 33  KSGNENCEPRSSGSGKRGKSNSRRRSTSRGRSDSRNTSPSNTRRRHSLSRSLTPPRRRYD 92

Query: 656 SPDITQF 676
           SPD  ++
Sbjct: 93  SPDYGRY 99


>AE014296-2411|AAF49717.2| 1333|Drosophila melanogaster CG17177-PA
           protein.
          Length = 1333

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -2

Query: 414 RSAECMNQMSETAVPLVLSSITIATTSHQ*G 322
           +  EC  Q+S  ++ LV+S+IT+AT +H  G
Sbjct: 701 QQCECHAQVSIASLLLVISAITVATNTHDYG 731


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,569,440
Number of Sequences: 53049
Number of extensions: 756944
Number of successful extensions: 1900
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1899
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3499501170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)