Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20456
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical...    30   1.6  
Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC006720-1|AAF60446.1|  350|Caenorhabditis elegans Hypothetical ...    29   2.7  

>AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical
           protein W10G11.14 protein.
          Length = 210

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 25/84 (29%), Positives = 36/84 (42%)
 Frame = +3

Query: 372 EPQFRTFGSCTRPSGRWCELPSAGLCLNASKAEASLAESGKDMLTVSPESREALNNVTLL 551
           EP ++ F    RPSG WC    AG     + AE S    G  +  +     EAL   T L
Sbjct: 41  EPGWKFFN---RPSGGWCMRVFAGFNAKKADAEKSCQAVGSTLSGIQ-NKNEALYIQTAL 96

Query: 552 VAFRIQNARRHVEAHLDRGDRCYR 623
           +A +I  +   V   + R  +C +
Sbjct: 97  LA-QIPQSSGSVWIGIQRTQKCLK 119


>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 405 RPSGRWCELPSAGLCLNASKAEASLAESGKDMLTVSPESREALNNVT 545
           RPSG WC     GL L  ++ EAS   + +  +    +++  LN +T
Sbjct: 35  RPSGPWCVKLFVGLYLQGNRNEASARCAAEGAVLSGVQNQAELNAMT 81


>AC006720-1|AAF60446.1|  350|Caenorhabditis elegans Hypothetical
           protein Y17G9B.5 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 447 CLNASKAEASLAESGKDMLTVSPESREALNNVTLLVAFRIQNARRHVE 590
           C  A+  E SL    K    + PE R+    +  +  F+ +  R HVE
Sbjct: 17  CFAAANQETSLVHVEKQFEAIEPEKRDKDAFMAAIATFKEKRGRTHVE 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,888,064
Number of Sequences: 27780
Number of extensions: 369950
Number of successful extensions: 1032
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)