Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20456
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   4.5  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    28   5.9  
At1g14740.1 68414.m01762 expressed protein                             28   5.9  
At4g26190.1 68417.m03770 expressed protein                             28   7.8  

>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 39  RAKAGLIQMFSTHRDCESTAYRSFSIK 119
           RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 710 KSSTDYSEPRHRTELYPDFGAVMHVLRKKPIASISAIQMGFDV-PSRVLNAKR 555
           K S +  +PR R  LY D GAV   L K+   + S    GF V PS+  + KR
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKE---TSSVDVNGFQVLPSQAESVKR 191


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 354 YCSVREEPQFRTFGSCTRP-SGRWCELPSAGLCLNASKAEASLAESGKDMLTVSPES 521
           + +VR       F S + P SG   EL  + LC N+ K   SL + GK+++T S  S
Sbjct: 46  FLNVRSNNLDGGFSSKSSPRSGN--ELTLSYLCENSGKLAESLGQKGKEVVTFSENS 100


>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 565  FKTRDGTSKPIWIAEIDAIGFFLNTCITAPKSGYN 669
            FKT++   KP+++ ++  +   + TCI+  K  Y+
Sbjct: 944  FKTQEKKDKPLFLKDLRRVWDHIGTCISCGKRKYD 978


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,098,812
Number of Sequences: 28952
Number of extensions: 356643
Number of successful extensions: 869
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)