Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20455
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 70 3e-13
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 6.1
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 6.1
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 26 6.1
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 8.0
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 25 8.0
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi... 25 8.0
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 25 8.0
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.0
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 70.1 bits (164), Expect = 3e-13
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 2/169 (1%)
Frame = +2
Query: 158 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTLLSVT*KLLVPMVKVQYSSMKGLRLHLP 337
ATLK I RLKS+KNI+KIT+++K V+ K T + +V K P
Sbjct: 32 ATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVFKEAGTKAP 91
Query: 338 KMTPSNCLLL*PLTEVCRTVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSRGILQRLY-E 511
+ + + +C +H+ +S++IR L +P EN + +G+K R L R E
Sbjct: 92 EEGKTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVRTQLLRFCPE 151
Query: 512 STSLVLLMRLDVSHYFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSY 658
S L S F +A Q+++ IL ++ ++YNKF S VS+
Sbjct: 152 SFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSF 200
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 522 NDVLSYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCTV 391
N L R+ ++L P I+L+FS LRR ++ + V T+
Sbjct: 174 NRFLESGFLRLSKNLVPGVISLLFSRDDELRRWACSILSDVKTI 217
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 6.1
Identities = 25/94 (26%), Positives = 38/94 (40%)
Frame = +2
Query: 410 SKVIRNRLSEPGAENIKVICVGDKSRGILQRLYESTSLVLLMRLDVSHYFLDASQLATAI 589
++ I L E AE+ + + + K G L L+ V + S+ + I
Sbjct: 2404 AEAIEQLLDEISAESSEHMVICAKLYGALFSHLPDAQAKQLLESKVLSLEIQ-SEFSVLI 2462
Query: 590 LTSGYEFGSGKIIYNKFKSVVSYAQSDCPLH*EV 691
L + +FGS KII K +V S L EV
Sbjct: 2463 LNAAVKFGSQKIIELKLSDIVCSIISTASLQKEV 2496
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 420 ITLDTPVCTVRQTSVRGHSNKQLLGVIF 337
+ L TP+CT+ V HS+ +L +++
Sbjct: 283 LILSTPLCTIVTLPVENHSSDAILTLLY 310
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 564 TQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSP 668
TQ +PL FSP+ +S+ S + S + P P
Sbjct: 1403 TQTDFPLVFSPERSSIDINASSMRSEKASFEIPFP 1437
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -3
Query: 294 FTIGTSSFQVTLSRVYLAADTIFMDCVIFWIFFTDLRRMEMAFKVAIF 151
F + + SF RVYL + + + ++W FFT++ F + +F
Sbjct: 224 FFLNSLSFLKIPFRVYLDSHDLTPNLGLWWYFFTEMFNEFRTFFLFVF 271
>SPAC1851.02 |||1-acylglycerol-3-phosphate
O-acyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 277 QLSGHAQQGVFSS*HHLHGLCDFLDIFHRFKTDGNGLQSSHIPVWLIVNHRHDL 116
+L G+ G + + +GL + F RFK + + H L+VNH+ +L
Sbjct: 59 RLCGYPVMGQYLTAKAYYGLASTILDF-RFKIENEEILRKHKSAVLVVNHQSEL 111
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 8.0
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = -3
Query: 450 SAPGSLRRLRITLDTPVCTVRQTSVRGHSNKQLLGVIFGRCNLSPFIELYCTF-TIG--- 283
+A +L R ++ D P+ TV GHS L+ I S F + + F TIG
Sbjct: 84 TAIDNLTRRLLSTDKPMSTVGTWFSIGHSTVVLITCIVVAATSSKFADRWNNFQTIGGII 143
Query: 282 TSSFQVTLSRVYLAADTIFMDCVIFWIF 199
+S + L + +T+ + + +W++
Sbjct: 144 GTSVSMGLLLLLAIGNTVLLVRLSYWLW 171
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 508 RKHIISVANEIGRLPLLS*RKSVGHCHSHLR 600
R+ I+ V E+ + L R+ +G+C +HL+
Sbjct: 144 REQIVQVIKELNKGNSLEVRRELGNCLAHLK 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,044
Number of Sequences: 5004
Number of extensions: 71468
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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