Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20455
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 40 0.001
07_03_0571 - 19602755-19603831 36 0.042
04_03_0515 + 16698589-16701066 29 2.7
12_02_1080 - 25911521-25911922 29 3.6
05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274... 29 3.6
10_08_0825 + 20831170-20831349,20831380-20831547,20831627-208316... 29 4.8
07_03_1586 - 27929947-27930056,27930143-27930286,27930377-279307... 28 6.3
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492... 28 6.3
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/33 (51%), Positives = 27/33 (81%)
Frame = +2
Query: 167 KAISIRLKSVKNIQKITQSMKMVSAAKYTLLSV 265
+A+ R+KSV+NIQKIT++MKMV+A+K + +
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASKLRAVQI 92
>07_03_0571 - 19602755-19603831
Length = 358
Score = 35.5 bits (78), Expect = 0.042
Identities = 15/29 (51%), Positives = 24/29 (82%)
Frame = +2
Query: 161 TLKAISIRLKSVKNIQKITQSMKMVSAAK 247
+L+ + R+ SV+N QKIT++MK+V+AAK
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAK 65
>04_03_0515 + 16698589-16701066
Length = 825
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 392 SDKPLSEVIATNNCLGSSSGGVTSALS*NCTAPSP*GRAAFRSR 261
S + LS ++A+ S++ T+A + + PSP AAFR R
Sbjct: 73 SRRRLSSILASTATASSTAASTTTAATASPARPSPPAHAAFRER 116
>12_02_1080 - 25911521-25911922
Length = 133
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 131 PPPRLGCPHPVRSVPTFCKFYGCLSVKFTSRRKNVAGRQ 15
P P P P S P + YGC++ RR+ + G +
Sbjct: 33 PVPYCPLPSPSLSTPLHARSYGCVATAREERRRRLDGEE 71
>05_06_0223 -
26525618-26526112,26526203-26526370,26526649-26527473,
26527898-26528004,26529701-26529767
Length = 553
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = -3
Query: 477 SPTQITLMFSAP-GSLRRLRITLDTPVCTVRQTSVRGHSNKQLLGV-IFGRCNLSPFIEL 304
SP T + S G ++ ++ DT T ++ GH +++L V I G C+ + +EL
Sbjct: 380 SPVLDTFILSVQQGGMKHDSVSGDT---TTNLRTMPGHKHERLKEVMIIGFCSATSMVEL 436
Query: 303 YCTFTIGTSSFQ-VTLSRV 250
C T+S + +TL V
Sbjct: 437 TCHILENTTSLETITLDAV 455
>10_08_0825 + 20831170-20831349,20831380-20831547,20831627-20831698,
20831997-20832075,20832182-20832375,20832469-20832558,
20832851-20832940,20833196-20833282,20833477-20833560,
20833690-20833809,20834096-20834103,20834443-20834575,
20835044-20835125,20835330-20835496,20836006-20836493,
20836551-20836638,20836716-20836818,20836932-20837083,
20837191-20837316,20837459-20837529,20837691-20837753,
20838418-20838490,20838972-20839040,20839180-20839257,
20839434-20839484,20839586-20839696
Length = 1008
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 389 RTVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYESTSLVLLMRLDVSHYFLDA 568
R H G+SK +++ L E G ++I + V SR ++ L S + +L + F+ A
Sbjct: 897 RLDHGGISKELQDLLLEYGIDSIAEVLVEGLSRVLINGLLHIVSANVRPKLQIVDTFIKA 956
Query: 569 SQL 577
L
Sbjct: 957 YYL 959
>07_03_1586 -
27929947-27930056,27930143-27930286,27930377-27930704,
27931189-27931404,27932099-27932284,27932439-27932521,
27932621-27932752,27932943-27932999,27933352-27933412,
27933807-27933889,27933975-27934134
Length = 519
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/46 (26%), Positives = 29/46 (63%)
Frame = -3
Query: 492 IPRDLSPTQITLMFSAPGSLRRLRITLDTPVCTVRQTSVRGHSNKQ 355
+PRD+ +++ +FS G++R+L++ L +P T + ++ +K+
Sbjct: 131 LPRDVKENEVSALFSQYGNIRQLKV-LRSPQKTRKACAILEFGSKE 175
>04_04_0165 +
23247265-23247472,23248115-23248407,23249182-23249239,
23249302-23250014
Length = 423
Score = 28.3 bits (60), Expect = 6.3
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 379 RGLSDCTHWCI 411
RG SDC+HWC+
Sbjct: 388 RGYSDCSHWCL 398
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,694,767
Number of Sequences: 37544
Number of extensions: 510350
Number of successful extensions: 1264
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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