Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20455
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   6e-18
SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            29   4.9  
SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)                 29   4.9  
SB_55643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_53162| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_19725| Best HMM Match : MgtE_N (HMM E-Value=1.4)                    28   6.5  
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)               28   8.5  
SB_23636| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_378| Best HMM Match : TTL (HMM E-Value=1.8)                         28   8.5  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 2/167 (1%)
 Frame = +2

Query: 173 ISIRLKSVKNIQKITQSMKMVSAAKYTLLSVT*KLLVPMVKVQYSSMKGLRLHLPKMTPS 352
           +S+RL+SVKNIQKIT+SMKMVSAAK+       K          +    + +      P 
Sbjct: 62  VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121

Query: 353 NCLLL*PLTE-VCRTVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYESTSLVL 529
           + +++      +C  +H+G++K ++  ++   + N+ ++  GDK++ IL R      L+ 
Sbjct: 122 HLIVVLSSDRGLCGGIHSGLAKAVKASIAGNPSRNVGIVSFGDKTKQILSRTLGKNMLMS 181

Query: 530 LMRLDVSH-YFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQS 667
            M +      F +A+ LA  IL +G++F +G + YN F+SVVS+  S
Sbjct: 182 FMDVGKKPPLFCEATFLAQEILDAGFDFNTGDMFYNVFRSVVSFRAS 228



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 23/49 (46%), Positives = 33/49 (67%)
 Frame = +1

Query: 256 AERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLSDCTH 402
           AE++LK+AR YG+GA   Y++ E+    +DPK L V ++SDRGL    H
Sbjct: 90  AEKELKSARAYGDGATALYDKVEIKQESEDPKHLIVVLSSDRGLCGGIH 138


>SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +3

Query: 546 SPTTFLTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPIALYTKKSIES 701
           SPTT  T  + PLP S Q ++++     + +S+     PSP+A+ T  +I S
Sbjct: 229 SPTTRQTSTAIPLPMSRQISAVITSPMAMQTST---AIPSPMAMQTSTAIPS 277


>SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 455 IKVICVGDKSRGILQRLYESTSLVLLMRL--DVSHYFL 562
           IK++  GDK  G+ + L+  T+LV  + L   V HY L
Sbjct: 284 IKIVSTGDKEPGLSRDLFADTNLVRFVELLDSVIHYLL 321


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 235 HHLHGLCDFLDIFHRFKTDGNGLQSSHIPVWL 140
           +H+   C+  + F+R +  G G    H+ VWL
Sbjct: 595 NHIRNRCNVENFFYRIEFQGRGTAHVHLLVWL 626


>SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)
          Length = 421

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/93 (24%), Positives = 34/93 (36%)
 Frame = -2

Query: 508 VQSLQDTARFISHTDHLDVLSTRFAETVADHFRYTSVYSPTNLCQRS*QQTIAWGHLREV 329
           V S  D  R +  + H+ + S      V     +  + S  +    S   TI   H  +V
Sbjct: 176 VISAPDLIRVMPSSSHIIIKSWSHHHQVMSSPSHVIIKSHHHQVTPSSSHTIIKSHHHQV 235

Query: 328 *PQPFHRTVLHLHHRDEQLSGHAQQGVFSS*HH 230
            P P H  +   HH+    S H    +  S HH
Sbjct: 236 APSPSHVIIKSCHHQVMPSSSHT---IIKSCHH 265


>SB_55643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +2

Query: 380 EVCRTVHTGVSKVIRNRLSEPGAENIKVI--CVGDKSRGILQRLY-ESTSLVLLMRLDVS 550
           E+ + +   +  ++    ++ G + +K++      +S+  +  LY E TSL + +   V+
Sbjct: 64  ELIQLLDNKILSLVMREATDDGRKALKILREFYASQSKPRIITLYTELTSLEMGVNETVT 123

Query: 551 HYFLDASQLATAILTSGYEFGSGKII 628
            YF+ A +  TA+  +    G G II
Sbjct: 124 DYFIRAEKAITALRNAKETLGDGLII 149


>SB_53162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +2

Query: 380 EVCRTVHTGVSKVIRNRLSEPGAENIKVI--CVGDKSRGILQRLY-ESTSLVLLMRLDVS 550
           E+ + +   +  ++    ++ G + +K++      +S+  +  LY E TSL + +   V+
Sbjct: 64  ELIQLLDNKILSLVMREATDDGRKALKILREFYASQSKPRIITLYTELTSLEMGVNETVT 123

Query: 551 HYFLDASQLATAILTSGYEFGSGKII 628
            YF+ A +  TA+  +    G G II
Sbjct: 124 DYFIRAEKAITALRNAKETLGDGLII 149


>SB_19725| Best HMM Match : MgtE_N (HMM E-Value=1.4)
          Length = 201

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +2

Query: 380 EVCRTVHTGVSKVIRNRLSEPGAENIKVI--CVGDKSRGILQRLY-ESTSLVLLMRLDVS 550
           E+ + +   +  ++    ++ G + +K++      +S+  +  LY E TSL + +   V+
Sbjct: 84  ELIQLLDNKILSLVMREATDDGRKALKILREFYASQSKPRIITLYTELTSLEMGVNETVT 143

Query: 551 HYFLDASQLATAILTSGYEFGSGKII 628
            YF+ A +  TA+  +    G G II
Sbjct: 144 DYFIRAEKAITALRNAKETLGDGLII 169


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 537 DWTSPTTFLTQVSWPLPFSPQDTSLVPE 620
           DWTSP     Q + P P  P   + VP+
Sbjct: 301 DWTSPQVSQPQFTMPPPLQPTTITAVPQ 328


>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
          Length = 936

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 546 SPTTFLTQVSWPLPFSPQDTSLVPERS---FITSSSLWYRTPSPIALYTK 686
           SPT F+TQ   P  F  Q  +L   +S   F+T S   Y T SP   +TK
Sbjct: 775 SPTLFVTQS--PTLFVTQSPTLCVTQSPTLFVTQSLTLYVTQSPTLCHTK 822


>SB_23636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 37  RRLVNFTDKHP*NLQNVGTLRTGCG----HPSRGGGLRSAKQEYGYFEGH 174
           RR    TD+HP    N+ T R  CG    H  R   +R+ ++  G  + H
Sbjct: 5   RRTCGHTDEHPDTQTNMRTHRRTCGQTDEHADRQTNMRTDRRTCGQTDKH 54


>SB_378| Best HMM Match : TTL (HMM E-Value=1.8)
          Length = 327

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
 Frame = +2

Query: 476 DKSRGILQRLYESTSLVLLMRLDVSHYFLDAS-----QLATAILTSG---YEFGSGKIIY 631
           ++++ I+Q LY +  L + + LDV   FL+ +     Q    +LT     + F   K+++
Sbjct: 54  EQTKWIIQALYANQKLDMSL-LDVISSFLEDAPIFLLQTYIVLLTRREFTWTFAEIKLVF 112

Query: 632 NKFKSVVSYAQS 667
           N FKSVV  A++
Sbjct: 113 NTFKSVVMLAKA 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,664,788
Number of Sequences: 59808
Number of extensions: 567470
Number of successful extensions: 1423
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)