Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20455
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 55 4e-08
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 38 0.007
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 33 0.14
At1g22275.1 68414.m02784 expressed protein 31 0.75
At5g20680.1 68418.m02456 expressed protein predicted proteins, A... 29 4.0
At5g27500.1 68418.m03287 hypothetical protein hypothetical prote... 28 5.3
At5g19130.2 68418.m02277 GPI transamidase component family prote... 28 7.0
At5g19130.1 68418.m02276 GPI transamidase component family prote... 28 7.0
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 27 9.2
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate... 27 9.2
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 27 9.2
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 55.2 bits (127), Expect = 4e-08
Identities = 49/173 (28%), Positives = 97/173 (56%), Gaps = 3/173 (1%)
Frame = +2
Query: 149 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTLLSVT*KLLVPMVKVQYSSMKGLRL 328
R+++T + + R+KSVKNIQKIT++MKMV+A+K + + + + ++++ G
Sbjct: 41 RSIST-QVVRNRMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQ-PFTALLGDNP 98
Query: 329 HLPKMTPSNCLLL*PLTEVCRTVHTGVSKVIR--NRLSEPGAENIKVICVGDKSRGILQR 502
+ + S + L +C +++ V KV R +L+ + ++ + VG+K++ I+ R
Sbjct: 99 SI-DVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFR 157
Query: 503 LYESTSLVLLMRLDVSHY-FLDASQLATAILTSGYEFGSGKIIYNKFKSVVSY 658
++ ++ + L+ + + S LA IL EF + +I+YNKF SVV++
Sbjct: 158 DSKNDIVLSVTELNKNPLNYAQVSVLADDIL-KNVEFDALRIVYNKFHSVVAF 209
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/30 (56%), Positives = 25/30 (83%)
Frame = +2
Query: 158 ATLKAISIRLKSVKNIQKITQSMKMVSAAK 247
A+L+ + R+ SVKN QKIT++MK+V+AAK
Sbjct: 51 ASLRELRDRIDSVKNTQKITEAMKLVAAAK 80
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/30 (46%), Positives = 24/30 (80%)
Frame = +2
Query: 158 ATLKAISIRLKSVKNIQKITQSMKMVSAAK 247
A ++ + R+ SVKN QKIT++M++V+AA+
Sbjct: 61 AGIRELRERIDSVKNTQKITEAMRLVAAAR 90
>At1g22275.1 68414.m02784 expressed protein
Length = 856
Score = 31.1 bits (67), Expect = 0.75
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -3
Query: 495 RIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCTVRQTSVRGHSNKQLLGVIFGRCNLSP 316
RIP+ Q T+ RL L TP ++T++ H + +G +F +L+P
Sbjct: 788 RIPKRRKTRQTTMFQEPQRRSTRLTPKLMTPTIIAKETAMADHPHSANIGDLFSEGSLNP 847
Query: 315 FIE 307
+ +
Sbjct: 848 YAD 850
>At5g20680.1 68418.m02456 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 551
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +1
Query: 265 DLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLSDCTHWCI 411
D A R V+ + ++ D+ ++++ RG+ DC HWC+
Sbjct: 488 DYSAGRAVKGTGVKLLDITALSHIRDEGHISRFSISASRGVQDCLHWCL 536
>At5g27500.1 68418.m03287 hypothetical protein hypothetical proteins
- Arabidopsis thaliana
Length = 187
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 98 RSVPTFCKFYGCLSVKFTSRRKNVAGRQFFSC 3
R +PT C G KFTS+ ++ GR FF C
Sbjct: 12 RGIPTKC-VCGLGVTKFTSKSQDNPGRPFFRC 42
>At5g19130.2 68418.m02277 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 696
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = -3
Query: 546 TSNLISNTNDVLSYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCTVRQTSVRG 370
T +L+ +L Y +C++P SPT ++M+ S L + P C+ + + G
Sbjct: 504 TLHLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCSPFSSRLHG 562
>At5g19130.1 68418.m02276 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 699
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = -3
Query: 546 TSNLISNTNDVLSYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCTVRQTSVRG 370
T +L+ +L Y +C++P SPT ++M+ S L + P C+ + + G
Sbjct: 507 TLHLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCSPFSSRLHG 565
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 131 PPPRLGCPHPVRSVPTFCKFYGCLSVKFTS 42
PPP G P PT C +G L+++ +S
Sbjct: 1249 PPPESGIPSITNPWPTPCSQFGVLAIRSSS 1278
>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
receptor kinase 1 (BAK1) / somatic embryogenesis
receptor-like kinase 3 (SERK3) identical to SP|Q94F62
BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
1 precursor (EC 2.7.1.37) (BRI1-associated receptor
kinase 1) (Somatic embryogenesis receptor-like kinase 3)
{Arabidopsis thaliana}; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain;
identical to cDNA somatic embryogenesis receptor-like
kinase 3 (SERK3) GI:14573458
Length = 615
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 253 PAERDLKAARPY---GEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLS 390
P ER L PY G A ER E PP D PK+ +A+ S RGL+
Sbjct: 356 PTERLL--VYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLA 402
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 489 VSCRDCTKAHH*CC**DWTSPTTFLTQVSWPLP 587
+SC+DC K +H C W SW P
Sbjct: 166 LSCKDCGKKYHKNCLKSWAQHRDLFHWSSWSCP 198
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,097,869
Number of Sequences: 28952
Number of extensions: 395291
Number of successful extensions: 1031
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -