Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20453
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    27   1.0  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    27   1.3  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   3.1  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    24   7.1  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    24   7.1  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    24   7.1  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        24   9.4  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    24   9.4  

>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 79  YFQCFEYLTVCVFTEIILL*FQQKFARLNLKVVLIVIMSTACKNRNVSIYLLYN 240
           + + + +L   +F ++     +Q    L+  V  + I  T CKN N SI LLY+
Sbjct: 224 FLEFYVFLEQLIFNKLSFASVEQLEKLLDQIVKRMKICFTYCKNDNPSIRLLYS 277


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 20/40 (50%), Positives = 23/40 (57%)
 Frame = +2

Query: 200 LAKIEMFRYTYSTM*TKFNNFVIL*NGSKKQSKILCNLSA 319
           LAK EM  YT S + T F+NF  L N +K    IL NL A
Sbjct: 165 LAKKEM-EYTTSAIATNFSNFSALHNRTKLIETIL-NLEA 202


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 137 YNNIISVNTQTVKYSKHWK*YNDYKKR 57
           YN ++  +     Y+  W  YND KKR
Sbjct: 112 YNLVLQYHLAKGHYNAAWSLYNDMKKR 138


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 339 YRYLCYKALKLHKILDCFFDPFYSMTKLL 253
           + +L +  ++ ++I D  FD FY+  KLL
Sbjct: 668 FGHLKHAVIRRNRIFDDGFDAFYNFGKLL 696


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = +1

Query: 91  FEY-LTVCVFTEIILL*FQQK--FARLNLKVVLIVIMSTACKNRNVSIYLLYNV 243
           F+Y   V +   ++L+ F  K  F +L  ++ L +++ T  +N  + +YLLY++
Sbjct: 566 FDYTFFVRIIWSLLLISFLSKPTFKQLRCQLSLFILLLTRLEN--MGLYLLYDI 617


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 229 LLYNVNKV*QFCHTVKWIEETIQN 300
           L  N +KV  F H  KWI+E   N
Sbjct: 220 LFQNSSKVKVFVHDEKWIDEQKMN 243


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 179 KTTLRFNLANFC*NYNNIISVNTQTVK 99
           K T+R N  + C N+N I ++ T T +
Sbjct: 304 KETIRCNKKSNCYNWNGIAALETYTTE 330


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 71  HYIISNVSNI*QFACSQK*YYY 136
           H+ IS++ N+ QFA ++  Y+Y
Sbjct: 628 HFPISSILNVKQFASTKCDYFY 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,330,681
Number of Sequences: 5004
Number of extensions: 23596
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)