Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20453
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40521| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_4971| Best HMM Match : Ras (HMM E-Value=0)                          27   5.2  

>SB_40521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 20/61 (32%), Positives = 34/61 (55%)
 Frame = +1

Query: 61  FL*SLYYFQCFEYLTVCVFTEIILL*FQQKFARLNLKVVLIVIMSTACKNRNVSIYLLYN 240
           +L   +YF+  +YL + V++E +    QQ F R+NL  +   ++S A    N+ +YLL  
Sbjct: 9   YLHDTFYFELKQYLGITVYSEQV----QQHFRRVNLDALTCSLLSGAV---NMRLYLLQK 61

Query: 241 V 243
           V
Sbjct: 62  V 62


>SB_4971| Best HMM Match : Ras (HMM E-Value=0)
          Length = 209

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 190 MSTACKNRNVSIYLLYNVNKV*QFCHTVKWIEE 288
           ++TA       I L+Y+VN+   F H  +W+EE
Sbjct: 73  LTTAYYRSAHGIVLIYDVNESETFLHLSQWLEE 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,179,594
Number of Sequences: 59808
Number of extensions: 153038
Number of successful extensions: 243
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)