Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20453
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   0.93 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   2.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   4.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    20   8.6  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 0.93
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 315 LKLHKILDCFFDPFYSMTKLLN 250
           +K+ KIL+CFF  + ++ ++LN
Sbjct: 114 IKISKILECFF-KYKTINQILN 134


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 225 YRNISIFASRRHNNYQNYFK 166
           Y N + + +  +NNY NY K
Sbjct: 324 YSNYNNYNNYNNNNYNNYNK 343


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -3

Query: 326 VTRHSNYIRFWIVSSIHFTV 267
           +T+H N+I+   V+ ++ T+
Sbjct: 125 MTKHHNFIKVCSVNDVNMTI 144


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 145 QKFARLNLKVVLIVIM 192
           +K+A L LK+VL  I+
Sbjct: 491 RKYAMLKLKIVLSTIL 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,192
Number of Sequences: 438
Number of extensions: 2307
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)