Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20453
         (385 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00480.1 68417.m00066 myc-related transcription factor (MYC1)...    27   5.7  
At3g46710.1 68416.m05071 disease resistance protein (CC-NBS-LRR ...    26   7.5  
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d...    26   7.5  

>At4g00480.1 68417.m00066 myc-related transcription factor (MYC1)
           identical to ATMYC1 GI:1853965 from [Arabidopsis
           thaliana]
          Length = 526

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 174 SFDSYYVYGLQKSK 215
           S++S+Y YGLQKSK
Sbjct: 69  SYESHYKYGLQKSK 82


>At3g46710.1 68416.m05071 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 847

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 298 FGLFLRSILQYDKIVKLCLHCRV 230
           F LF    ++++ +VKL LHC V
Sbjct: 716 FSLFSEETVRFELLVKLTLHCDV 738


>At2g35340.1 68415.m04333 RNA helicase, putative similar to
           ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1110

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 288 FFDPFYSMTKLLNFVYIV 235
           +FD FYSMT    F+Y++
Sbjct: 159 YFDIFYSMTDFHYFIYVI 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,329,382
Number of Sequences: 28952
Number of extensions: 102509
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)