Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20452
         (484 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   2.6  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   4.5  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   4.5  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    21   7.9  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 48  WLVTDYKLPVISELV 4
           W   DYK PV+ +LV
Sbjct: 153 WFPFDYKQPVVFDLV 167


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 335 QRFHQEHDHRNLSA 376
           + FH+EHD R  S+
Sbjct: 260 RHFHEEHDTRRASS 273


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 411 PVPAATMSTAQSAERF 364
           P+P  T STA SA  +
Sbjct: 201 PIPQRTASTASSASNY 216


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 4/11 (36%), Positives = 7/11 (63%)
 Frame = -1

Query: 148 HHICRSSDQWW 116
           HH+ ++   WW
Sbjct: 88  HHLIKNKPNWW 98


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,402
Number of Sequences: 336
Number of extensions: 2212
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)