Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20452
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 131 2e-31
03_01_0547 + 4093196-4093657,4094267-4095148 131 2e-31
03_01_0544 + 4082528-4082989,4083585-4084466 131 2e-31
03_01_0543 + 4076981-4077442,4078145-4079026 131 2e-31
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 78 4e-15
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 78 4e-15
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 53 1e-07
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 51 4e-07
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 50 7e-07
02_04_0462 + 23131433-23132836 50 1e-06
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 48 3e-06
03_05_0511 + 25056018-25059107 32 0.28
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 31 0.37
04_01_0103 + 1082077-1082167,1083037-1085477 31 0.48
02_04_0017 + 18937774-18937864,18938505-18940945 31 0.48
05_07_0208 + 28412736-28415348 31 0.64
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 31 0.64
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 31 0.64
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 30 0.85
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314... 30 1.1
01_06_0662 + 30987187-30987277,30987825-30990214 30 1.1
02_04_0148 - 20198407-20201424 29 2.0
06_01_0325 - 2366193-2366367,2367063-2367122,2367323-2367463,236... 28 4.5
04_03_0106 + 11325172-11325379,11326590-11326640,11326987-113270... 28 4.5
12_02_0382 - 18392481-18392525,18392926-18393018,18393149-183932... 27 6.0
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 27 6.0
01_01_0016 - 88825-90411 27 6.0
11_04_0093 + 13407686-13409554 27 7.9
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 131 bits (317), Expect = 2e-31
Identities = 61/68 (89%), Positives = 63/68 (92%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 85.4 bits (202), Expect = 2e-17
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
RGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQ
Sbjct: 69 RGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 108
Score = 63.7 bits (148), Expect = 7e-11
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
ADCAVLI+ + TG FEAGISK+GQTREHALL FTLGV
Sbjct: 109 ADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGV 145
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 131 bits (317), Expect = 2e-31
Identities = 61/68 (89%), Positives = 63/68 (92%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 85.4 bits (202), Expect = 2e-17
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
RGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQ
Sbjct: 69 RGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 108
Score = 63.7 bits (148), Expect = 7e-11
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
ADCAVLI+ + TG FEAGISK+GQTREHALL FTLGV
Sbjct: 109 ADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGV 145
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 131 bits (317), Expect = 2e-31
Identities = 61/68 (89%), Positives = 63/68 (92%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 85.4 bits (202), Expect = 2e-17
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
RGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQ
Sbjct: 69 RGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 108
Score = 63.7 bits (148), Expect = 7e-11
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
ADCAVLI+ + TG FEAGISK+GQTREHALL FTLGV
Sbjct: 109 ADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGV 145
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 131 bits (317), Expect = 2e-31
Identities = 61/68 (89%), Positives = 63/68 (92%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 85.4 bits (202), Expect = 2e-17
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
RGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQ
Sbjct: 69 RGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 108
Score = 63.7 bits (148), Expect = 7e-11
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
ADCAVLI+ + TG FEAGISK+GQTREHALL FTLGV
Sbjct: 109 ADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGV 145
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 77.8 bits (183), Expect = 4e-15
Identities = 32/63 (50%), Positives = 46/63 (73%)
Frame = +1
Query: 67 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 246
+ +N+ ++GHVDSGKST +G L++ G I K+ + K EKEA+E GKGSF YAW +D+
Sbjct: 246 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAKEKGKGSFAYAWAMDESSE 305
Query: 247 ERD 255
ER+
Sbjct: 306 ERE 308
Score = 53.2 bits (122), Expect = 1e-07
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
RG+T+ +A+ ET KY V ++D+PGH+DF+ NMI+G +Q
Sbjct: 309 RGVTMTVAVAYLETKKYRVVLLDSPGHKDFVPNMISGATQ 348
Score = 36.7 bits (81), Expect = 0.010
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKN-----GQTREHALLDFTLGV 484
AD A+L+V A TG FEAG+ GQT+EHA L + GV
Sbjct: 349 ADAAILVVDACTGSFEAGMDGEGGKSVGQTKEHAQLIRSFGV 390
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 77.8 bits (183), Expect = 4e-15
Identities = 32/63 (50%), Positives = 46/63 (73%)
Frame = +1
Query: 67 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 246
+ +N+ ++GHVDSGKST +G L++ G I K+ + K EKEA+E GKGSF YAW +D+
Sbjct: 246 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAKEKGKGSFAYAWAMDESSE 305
Query: 247 ERD 255
ER+
Sbjct: 306 ERE 308
Score = 53.2 bits (122), Expect = 1e-07
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
RG+T+ +A+ ET KY V ++D+PGH+DF+ NMI+G +Q
Sbjct: 309 RGVTMTVAVAYLETKKYRVVLLDSPGHKDFVPNMISGATQ 348
Score = 36.7 bits (81), Expect = 0.010
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKN-----GQTREHALLDFTLGV 484
AD A+L+V A TG FEAG+ GQT+EHA L + GV
Sbjct: 349 ADAAILVVDACTGSFEAGMDGEGGKSVGQTKEHAQLIRSFGV 390
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 52.8 bits (121), Expect = 1e-07
Identities = 19/40 (47%), Positives = 31/40 (77%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
RGIT+ + + F+T Y+V ++D+PGH+DF+ NMI+G +Q
Sbjct: 296 RGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQ 335
Score = 37.1 bits (82), Expect = 0.007
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKN--GQTREHALLDFTLGV 484
+D A+L++ A G FEAG+ N GQT+EH+ L + GV
Sbjct: 336 SDAAILVIDASIGSFEAGMGINGIGQTKEHSQLVRSFGV 374
Score = 30.3 bits (65), Expect = 0.85
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 196 MGKGSFKYAWVLDKLKAERD 255
+GKGSF YAW +D+ ER+
Sbjct: 276 IGKGSFAYAWAMDESADERE 295
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 51.2 bits (117), Expect = 4e-07
Identities = 21/51 (41%), Positives = 36/51 (70%)
Frame = +1
Query: 100 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 252
D+GKST G +++ G +D RTI+K+EKEA++ + S+ A+++D + ER
Sbjct: 4 DAGKSTAGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 54
Score = 49.6 bits (113), Expect = 1e-06
Identities = 23/37 (62%), Positives = 26/37 (70%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
AD VL+++A GEFE G K GQTREH LL TLGV
Sbjct: 100 ADIGVLVISARKGEFETGYEKGGQTREHVLLAKTLGV 136
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAP----GHRDFIKNMITGTSQ 374
+G T+++ FET TI+DAP GH+ ++ NMI+G SQ
Sbjct: 56 KGKTVEVGRAHFETETTRFTILDAPVKMKGHKSYVPNMISGASQ 99
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 50.4 bits (115), Expect = 7e-07
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQL 377
RGITI A ++ET+K + +D PGH D++KNMITG +Q+
Sbjct: 114 RGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQM 154
Score = 34.7 bits (76), Expect = 0.039
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 207
+ K H+N+ IGHVD GK+T T ++ + G ++ +K +E +G
Sbjct: 63 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEAGKAKAVAFDEIDKAPEEKARG 115
>02_04_0462 + 23131433-23132836
Length = 467
Score = 49.6 bits (113), Expect = 1e-06
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQL 377
RGITI+ A ++ET + +D PGH D++KNMITG +Q+
Sbjct: 117 RGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQM 157
Score = 37.5 bits (83), Expect = 0.006
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 49 KMGKEKTHINIVVIGHVDSGKSTTTGHL---IYKCGGIDKRTIEKFEKEAQEMGKG 207
K + K H+NI IGHVD GK+T T L + GG + ++ + +E +G
Sbjct: 63 KFERTKPHVNIGTIGHVDHGKTTLTAALTMVLASVGGSAPKKYDEIDAAPEERARG 118
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 48.4 bits (110), Expect = 3e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
AD VL+++A GEFE G + GQTREH LL TLGV
Sbjct: 55 ADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGV 91
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
+G T+++ FET TI+DAPGH+ ++ NMI+G SQ
Sbjct: 15 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQ 54
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 31.9 bits (69), Expect = 0.28
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCG 147
N ++ HVD GK+T HL+ CG
Sbjct: 12 NTCILAHVDHGKTTLADHLVASCG 35
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 31.5 bits (68), Expect = 0.37
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCG 147
N+ VI HVD GK+T L+ +CG
Sbjct: 66 NVAVIAHVDHGKTTLMDRLLRQCG 89
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 31.1 bits (67), Expect = 0.48
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 25 QFVIRD*PKMGKEKTHI-NIVVIGHVDSGKSTTTGHLIYKCG 147
+F + + ++ +K +I N+ VI HVD GKST T L+ G
Sbjct: 3 KFTVEELRRIMDKKNNIRNMSVIAHVDHGKSTLTDSLVAAAG 44
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 31.1 bits (67), Expect = 0.48
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 25 QFVIRD*PKMGKEKTHI-NIVVIGHVDSGKSTTTGHLIYKCG 147
+F + + ++ +K +I N+ VI HVD GKST T L+ G
Sbjct: 3 KFTVEELRRIMDKKNNIRNMSVIAHVDHGKSTLTDSLVAAAG 44
>05_07_0208 + 28412736-28415348
Length = 870
Score = 30.7 bits (66), Expect = 0.64
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 205 GSFKYAWVLDKLKAERDVVSQSILLSG 285
G YAW + +E+DVVS +I+LSG
Sbjct: 548 GQTSYAWAQFSVHSEKDVVSWNIMLSG 574
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 30.7 bits (66), Expect = 0.64
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 70 HINIVVIGHVDSGKSTTTGHLIYKCG 147
HI+ V++ H+D+GK+TTT ++Y G
Sbjct: 105 HIS-VIMAHIDAGKTTTTERVLYYTG 129
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDF 344
RGITI +K+ + IID PGH DF
Sbjct: 153 RGITITSPPTTAFWNKHRINIIDTPGHVDF 182
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 30.7 bits (66), Expect = 0.64
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDF 344
+GITI A + Y V IID PGH DF
Sbjct: 120 KGITIQSAATYCTWNGYQVNIIDTPGHVDF 149
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI 153
NI + H+DSGK+T T ++Y G I
Sbjct: 70 NIGISAHIDSGKTTLTERVLYYTGRI 95
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
M K+ N+ VI HVD GKST T L+ G
Sbjct: 13 MDKKDNIRNMSVIAHVDHGKSTLTDSLVAAAG 44
>02_01_0432 -
3144560-3144655,3144792-3144832,3145019-3145094,
3145465-3145542,3146121-3146208,3146613-3146686,
3147445-3147579,3147699-3147770,3148239-3148325,
3148418-3148522,3149028-3149085,3149576-3149634,
3149960-3150056,3150217-3150317,3150443-3150487,
3150619-3150681,3151082-3151147,3151286-3151342,
3151570-3151656,3152063-3152239,3152413-3152625
Length = 624
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 174
N +I H+D GKST L+ G + KR +++
Sbjct: 79 NFSIIAHIDHGKSTLADKLLELTGTVQKREMKQ 111
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
M K+ N+ V+ HVD GKST T L+ G
Sbjct: 13 MDKKHNIRNMSVVAHVDHGKSTLTDSLVAAAG 44
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 198
N ++ HVD GK++ HLI G ++R E+ A+ M
Sbjct: 18 NTCILAHVDHGKTSLADHLIAAYGS-ERRVSERMAGSARVM 57
>06_01_0325 -
2366193-2366367,2367063-2367122,2367323-2367463,
2368175-2368288,2368444-2368475,2368736-2368793,
2369263-2369434,2369584-2370334,2370743-2371036
Length = 598
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDK 159
N +I HVD GKST L+ G I K
Sbjct: 59 NFSIIAHVDHGKSTLADRLLELTGTIKK 86
>04_03_0106 +
11325172-11325379,11326590-11326640,11326987-11327073,
11327276-11327373
Length = 147
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 64 KTHINIVVIGHVDSG 108
K H+N+V IGHVD G
Sbjct: 104 KRHLNVVFIGHVDPG 118
>12_02_0382 -
18392481-18392525,18392926-18393018,18393149-18393213,
18393363-18393425,18393609-18393705,18395906-18395983,
18396012-18396110
Length = 179
Score = 27.5 bits (58), Expect = 6.0
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 329 WTQRFHQEHDHRNLSADCAVLIVAAGTGEFEAGISK-NGQTREHALLDFTLG 481
W QR+ Q +D LSA L +A GT A I K NG E +L T+G
Sbjct: 73 WMQRYMQNYDEVELSA----LGMAIGTVVTVAEILKNNGLATEKKILTSTIG 120
>04_04_0214 -
23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 197 WVKDPSNMLGYWTN*RLSVTWYHNR 271
W+ PS+ +GYW N +S + N+
Sbjct: 876 WISSPSSGVGYWGNSEMSQRTFFNQ 900
>01_01_0016 - 88825-90411
Length = 528
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 463 QGMLTGLTVLRDTSFEFTGTGSYDEHSA 380
+G+L L+V+ F+ TGT + D+H A
Sbjct: 251 RGLLPALSVIEPRYFDLTGTPADDDHPA 278
>11_04_0093 + 13407686-13409554
Length = 622
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 205 GSFKYAWVLDKLKAERDVVSQSILLSGSSK 294
GS AWVL ER+VVS + ++SG ++
Sbjct: 211 GSVDDAWVLFDAMPERNVVSWNAMISGYAR 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,180,739
Number of Sequences: 37544
Number of extensions: 264808
Number of successful extensions: 798
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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