Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20452
(484 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 7e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 87 7e-18
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 50 8e-07
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 48 5e-06
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.22
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 1.1
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 29 1.5
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_16092| Best HMM Match : FixQ (HMM E-Value=2.5) 29 2.7
SB_14110| Best HMM Match : DUF858 (HMM E-Value=2) 28 3.5
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 28 3.5
SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 27 8.1
SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17) 27 8.1
SB_41762| Best HMM Match : Tom22 (HMM E-Value=5.3) 27 8.1
SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5) 27 8.1
SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17) 27 8.1
SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5) 27 8.1
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17) 27 8.1
SB_54171| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8) 27 8.1
SB_32624| Best HMM Match : rve (HMM E-Value=0.00042) 27 8.1
SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18) 27 8.1
SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068) 27 8.1
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 27 8.1
SB_1704| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 7e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 198
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 87.0 bits (206), Expect = 7e-18
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQL 377
RGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ+
Sbjct: 21 RGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQM 61
Score = 45.6 bits (103), Expect = 2e-05
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 196 MGKGSFKYAWVLDKLKAERD 255
MGKGSFKYAWVLDKLKAER+
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 50.4 bits (115), Expect = 8e-07
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 267 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
+D+ L +F+T +T++DAPGH+DFI NMITG +Q
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQ 36
Score = 50.4 bits (115), Expect = 8e-07
Identities = 24/37 (64%), Positives = 28/37 (75%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
AD A+L+V A TGEFEAG GQTREHA+L +LGV
Sbjct: 37 ADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGV 73
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 47.6 bits (108), Expect = 5e-06
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
AD VL+++A GEFE G + GQTREHA+L T GV
Sbjct: 246 ADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGV 282
Score = 44.8 bits (101), Expect = 4e-05
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +1
Query: 136 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
Y G +DKRT+EK+E+EA+E + ++ +W LD + ERD
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
Score = 44.8 bits (101), Expect = 4e-05
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
+G T+++ F+T + T++DAPGH+ F+ NMI+G +Q
Sbjct: 206 KGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQ 245
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.22
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKN 353
RGI++ ++ F + I+D PGH+DF ++
Sbjct: 63 RGISVATSVLAFNYRDKKINILDTPGHKDFAED 95
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 67 THINIVVIGHVDSGKSTTTGHLIY 138
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 309 VTIIDAPGHRDFIKNMITGTSQLIALCSS 395
+T++D PGH IK +I G +Q+I C +
Sbjct: 104 MTLVDCPGHASLIKTII-GGAQIIGECGT 131
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Frame = +1
Query: 49 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 222
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
Query: 223 WV--LDKLKAERDVVSQSIL-LSGSSKLASTMLPSLMLL 330
L +E D++ +++ G + L T++ ++
Sbjct: 88 LPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGGAQII 126
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 174
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_16092| Best HMM Match : FixQ (HMM E-Value=2.5)
Length = 250
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 151 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERDVVSQSI--LLSGSSKLASTMLPSLM 324
IDK T K+EK+ E K K A++ DK + D V +I L + L + +LP+ +
Sbjct: 81 IDKATDAKYEKQNNEADK--TKGAFISDKESVKEDEVPDNIAELQQEAKDLDTIVLPTEV 138
Query: 325 LLDTE 339
D E
Sbjct: 139 NKDVE 143
>SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)
Length = 207
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 362 RNLSADCAVLIVAAGTGEFEAGISKNGQTREHAL 463
+ S DC +L V +GTG G+ K+G T AL
Sbjct: 62 QGFSEDCRILDVGSGTGLQAEGLVKHGFTNIDAL 95
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 7 ELGYYRQFVIRD*PKMGKEK-THINIVVIGHVDSGKSTTTGHLIY 138
ELG ++++R +M + + + V+G+VD+GKST G L +
Sbjct: 209 ELGTVGEYLVR--VRMDENDFMEVRVAVVGNVDAGKSTLLGVLTH 251
>SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 1163
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 354 MITGTSQLIALCSS*LPVPVNSKLVSLRTVKPVSMPCS 467
M+T + + +S P P N+ L SLRT +P CS
Sbjct: 765 MMTLPDDIATIDASNSPHPANAALASLRTREPPEESCS 802
>SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1017
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 354 MITGTSQLIALCSS*LPVPVNSKLVSLRTVKPVSMPCS 467
M+T + + +S P P N+ L SLRT +P CS
Sbjct: 452 MMTLPDDIATIDASNSPHPANAALASLRTREPPEESCS 489
>SB_41762| Best HMM Match : Tom22 (HMM E-Value=5.3)
Length = 568
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 354 MITGTSQLIALCSS*LPVPVNSKLVSLRTVKPVSMPCS 467
M+T + + +S P P N+ L SLRT +P CS
Sbjct: 212 MMTLPDDIATIDASNSPHPANAALASLRTREPPEESCS 249
>SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 325
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 354 MITGTSQLIALCSS*LPVPVNSKLVSLRTVKPVSMPCS 467
M+T + + +S P P N+ L SLRT +P CS
Sbjct: 254 MMTLPDDIATIDASNSPHPANAALASLRTREPPEESCS 291
>SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1229
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 354 MITGTSQLIALCSS*LPVPVNSKLVSLRTVKPVSMPCS 467
M+T + + +S P P N+ L SLRT +P CS
Sbjct: 699 MMTLPDDIATIDASNSPHPANAALASLRTREPPEESCS 736
>SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 398
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 354 MITGTSQLIALCSS*LPVPVNSKLVSLRTVKPVSMPCS 467
M+T + + +S P P N+ L SLRT +P CS
Sbjct: 192 MMTLPDDIATIDASNSPHPANAALASLRTREPPEESCS 229
>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1013
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 354 MITGTSQLIALCSS*LPVPVNSKLVSLRTVKPVSMPCS 467
M+T + + +S P P N+ L SLRT +P CS
Sbjct: 113 MMTLPDDIATIDASNSPHPANAALASLRTREPPEESCS 150
>SB_54171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 354 MITGTSQLIALCSS*LPVPVNSKLVSLRTVKPVSMPCS 467
M+T + + +S P P N+ L SLRT +P CS
Sbjct: 71 MMTLPDDIATIDASNSPHPANAALASLRTREPPEESCS 108
>SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 354 MITGTSQLIALCSS*LPVPVNSKLVSLRTVKPVSMPCS 467
M+T + + +S P P N+ L SLRT +P CS
Sbjct: 229 MMTLPDDIATIDASNSPHPANAALASLRTREPPEESCS 266
>SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8)
Length = 420
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 354 MITGTSQLIALCSS*LPVPVNSKLVSLRTVKPVSMPCS 467
M+T + + +S P P N+ L SLRT +P CS
Sbjct: 292 MMTLPDDIATIDASNSPHPANAALASLRTREPPEESCS 329
>SB_32624| Best HMM Match : rve (HMM E-Value=0.00042)
Length = 415
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 354 MITGTSQLIALCSS*LPVPVNSKLVSLRTVKPVSMPCS 467
M+T + + +S P P N+ L SLRT +P CS
Sbjct: 113 MMTLPDDIATIDASNSPHPANAALASLRTREPPEESCS 150
>SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18)
Length = 838
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 354 MITGTSQLIALCSS*LPVPVNSKLVSLRTVKPVSMPCS 467
M+T + + +S P P N+ L SLRT +P CS
Sbjct: 306 MMTLPDDIATIDASNSPHPANAALASLRTREPPEESCS 343
>SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)
Length = 1502
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 354 MITGTSQLIALCSS*LPVPVNSKLVSLRTVKPVSMPCS 467
M+T + + +S P P N+ L SLRT +P CS
Sbjct: 1019 MMTLPDDIATIDASNSPHPANAALASLRTREPPEESCS 1056
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/83 (22%), Positives = 36/83 (43%)
Frame = +3
Query: 231 GQTKG*A*RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQLIALCSS*LPVP 410
G TK G+ +D +W +K V I P +FI+ + + ++ + L +
Sbjct: 299 GLTKERMLSGVDLD-RIWPLNNTKCTVRRIHKPTKEEFIERCMKPGNTILTISPFNLTLH 357
Query: 411 VNSKLVSLRTVKPVSMPCSISPS 479
+ + ++ P+S C IS S
Sbjct: 358 AHVCICTIEEQFPISPECCISGS 380
>SB_1704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 354 MITGTSQLIALCSS*LPVPVNSKLVSLRTVKPVSMPCS 467
M+T + + +S P P N+ L SLRT +P CS
Sbjct: 192 MMTLPDDIATIDASNSPHPANAALASLRTREPPEESCS 229
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,675,478
Number of Sequences: 59808
Number of extensions: 288095
Number of successful extensions: 722
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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