Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20452
(484 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 144 2e-35
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 144 2e-35
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 144 2e-35
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 144 2e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 1e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 82 2e-16
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 82 2e-16
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 78 4e-15
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 50 7e-07
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 50 7e-07
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 50 7e-07
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 46 1e-05
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 46 1e-05
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.047
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.14
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.14
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.19
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 31 0.44
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 31 0.44
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.44
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.44
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical pr... 28 3.1
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 144 bits (350), Expect = 2e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 87.8 bits (208), Expect = 4e-18
Identities = 43/73 (58%), Positives = 53/73 (72%)
Frame = +3
Query: 156 QTYHREVREGGPGNG*RILQICLGIGQTKG*A*RGITIDIALWKFETSKYYVTIIDAPGH 335
+ + +E +E G G+ + + + K RGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 336 RDFIKNMITGTSQ 374
RDFIKNMITGTSQ
Sbjct: 96 RDFIKNMITGTSQ 108
Score = 70.1 bits (164), Expect = 8e-13
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
ADCAVL+VA GTGEFEAGISKNGQTREHALL TLGV
Sbjct: 109 ADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGV 145
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 144 bits (350), Expect = 2e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 87.8 bits (208), Expect = 4e-18
Identities = 43/73 (58%), Positives = 53/73 (72%)
Frame = +3
Query: 156 QTYHREVREGGPGNG*RILQICLGIGQTKG*A*RGITIDIALWKFETSKYYVTIIDAPGH 335
+ + +E +E G G+ + + + K RGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 336 RDFIKNMITGTSQ 374
RDFIKNMITGTSQ
Sbjct: 96 RDFIKNMITGTSQ 108
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 144 bits (350), Expect = 2e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 87.8 bits (208), Expect = 4e-18
Identities = 43/73 (58%), Positives = 53/73 (72%)
Frame = +3
Query: 156 QTYHREVREGGPGNG*RILQICLGIGQTKG*A*RGITIDIALWKFETSKYYVTIIDAPGH 335
+ + +E +E G G+ + + + K RGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 336 RDFIKNMITGTSQ 374
RDFIKNMITGTSQ
Sbjct: 96 RDFIKNMITGTSQ 108
Score = 70.1 bits (164), Expect = 8e-13
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
ADCAVL+VA GTGEFEAGISKNGQTREHALL TLGV
Sbjct: 109 ADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGV 145
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 144 bits (350), Expect = 2e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 87.8 bits (208), Expect = 4e-18
Identities = 43/73 (58%), Positives = 53/73 (72%)
Frame = +3
Query: 156 QTYHREVREGGPGNG*RILQICLGIGQTKG*A*RGITIDIALWKFETSKYYVTIIDAPGH 335
+ + +E +E G G+ + + + K RGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 336 RDFIKNMITGTSQ 374
RDFIKNMITGTSQ
Sbjct: 96 RDFIKNMITGTSQ 108
Score = 70.1 bits (164), Expect = 8e-13
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
ADCAVL+VA GTGEFEAGISKNGQTREHALL TLGV
Sbjct: 109 ADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGV 145
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 1e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAER 252
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 81.8 bits (193), Expect = 2e-16
Identities = 35/65 (53%), Positives = 48/65 (73%)
Frame = +1
Query: 61 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 240
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 241 KAERD 255
+ ER+
Sbjct: 227 EEERE 231
Score = 59.3 bits (137), Expect = 1e-09
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
RG+T+DI FETS + ++DAPGH+DFI NMITGTSQ
Sbjct: 232 RGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQ 271
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/37 (62%), Positives = 27/37 (72%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
AD A+L+V A TGEFE G GQT+EHALL +LGV
Sbjct: 272 ADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGV 308
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 81.8 bits (193), Expect = 2e-16
Identities = 35/65 (53%), Positives = 48/65 (73%)
Frame = +1
Query: 61 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 240
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 241 KAERD 255
+ ER+
Sbjct: 245 EEERE 249
Score = 59.3 bits (137), Expect = 1e-09
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
RG+T+DI FETS + ++DAPGH+DFI NMITGTSQ
Sbjct: 250 RGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQ 289
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/37 (62%), Positives = 27/37 (72%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
AD A+L+V A TGEFE G GQT+EHALL +LGV
Sbjct: 290 ADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGV 326
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 77.8 bits (183), Expect = 4e-15
Identities = 33/67 (49%), Positives = 48/67 (71%)
Frame = +1
Query: 55 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 234
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 235 KLKAERD 255
ER+
Sbjct: 164 TNDEERE 170
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/73 (35%), Positives = 40/73 (54%)
Frame = +3
Query: 156 QTYHREVREGGPGNG*RILQICLGIGQTKG*A*RGITIDIALWKFETSKYYVTIIDAPGH 335
+ Y RE +E G + L C+ + +G T+++ FET K + TI+DAPGH
Sbjct: 142 EKYEREAKEKGRESW--YLSWCMDTNDEE--REKGKTVEVGRAYFETEKRHFTILDAPGH 197
Query: 336 RDFIKNMITGTSQ 374
+ F+ NMI G +Q
Sbjct: 198 KSFVPNMIVGANQ 210
Score = 47.6 bits (108), Expect = 5e-06
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
AD AVL+++A GEFE G + GQTREH++L T GV
Sbjct: 211 ADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGV 247
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 50.4 bits (115), Expect = 7e-07
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQL 377
RGITI+ ++ET+K + ID PGH D+IKNMITG +Q+
Sbjct: 96 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQM 136
Score = 36.3 bits (80), Expect = 0.012
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 228
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 229 LDKLKAER 252
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 50.4 bits (115), Expect = 7e-07
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQL 377
RGITI+ ++ET+K + ID PGH D+IKNMITG +Q+
Sbjct: 97 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQM 137
Score = 36.3 bits (80), Expect = 0.012
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 228
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 229 LDKLKAER 252
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 50.4 bits (115), Expect = 7e-07
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQL 377
RGITI+ ++ET+K + ID PGH D+IKNMITG +Q+
Sbjct: 97 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQM 137
Score = 36.3 bits (80), Expect = 0.012
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 228
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 229 LDKLKAER 252
L+ A+R
Sbjct: 106 LEYETAKR 113
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQL 377
RGITI++A +E+ + D PGH DFIKNMI GTSQ+
Sbjct: 92 RGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQM 132
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTT 123
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQL 377
RGITI++A +E+ + D PGH DFIKNMI GTSQ+
Sbjct: 92 RGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQM 132
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTT 123
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.047
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI 153
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDF 344
RGIT+ A + + + +ID PGH DF
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDF 103
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.11
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGID 156
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDF 344
RGITI A + + IID PGH DF
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDF 125
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.14
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.14
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 192
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQLIALCSS*LPVPVNSKLVSL 434
RGIT+ Y + +ID PGH DF + S+ +A+C L + ++ V
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEV----SRSLAVCDGILLLVAANQGVQA 141
Query: 435 RTV 443
+T+
Sbjct: 142 QTI 144
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 31.1 bits (67), Expect = 0.44
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 154 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
+KR ++ EKE + F Y LDK+K ERD
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 31.1 bits (67), Expect = 0.44
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 154 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 255
+KR ++ EKE + F Y LDK+K ERD
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.44
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 28 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 138
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.44
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 28 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 138
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 73 INIVVIGHVDSGKSTTT 123
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 73 INIVVIGHVDSGKSTTT 123
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical
protein D2013.5 protein.
Length = 934
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 169 EKFEKEAQEMGKGSFKYAWVLDKLKAERDVVSQSILLS 282
E+ +K +EM K +Y L++L+ E V+ Q +LLS
Sbjct: 211 ERIQKLQEEMLKTQSQYQRELERLEKENKVLKQRLLLS 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,843,821
Number of Sequences: 27780
Number of extensions: 213572
Number of successful extensions: 656
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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