Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20452
(484 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 128 1e-30
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 128 1e-30
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 128 1e-30
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 128 1e-30
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 76 1e-14
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 68 3e-12
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 50 6e-07
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 50 8e-07
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.13
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.13
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 30 0.71
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 30 0.71
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 1.6
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 28 2.9
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 28 3.8
At5g27240.1 68418.m03249 DNAJ heat shock N-terminal domain-conta... 27 6.6
At5g37055.1 68418.m04446 zinc finger (HIT type) family protein c... 27 8.8
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 27 8.8
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 27 8.8
At1g78850.1 68414.m09191 curculin-like (mannose-binding) lectin ... 27 8.8
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 128 bits (310), Expect = 1e-30
Identities = 60/68 (88%), Positives = 62/68 (91%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 85.4 bits (202), Expect = 2e-17
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
RGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQ
Sbjct: 69 RGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 108
Score = 63.7 bits (148), Expect = 6e-11
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
ADCAVLI+ + TG FEAGISK+GQTREHALL FTLGV
Sbjct: 109 ADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGV 145
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 128 bits (310), Expect = 1e-30
Identities = 60/68 (88%), Positives = 62/68 (91%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 85.4 bits (202), Expect = 2e-17
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
RGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQ
Sbjct: 69 RGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 108
Score = 63.7 bits (148), Expect = 6e-11
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
ADCAVLI+ + TG FEAGISK+GQTREHALL FTLGV
Sbjct: 109 ADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGV 145
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 128 bits (310), Expect = 1e-30
Identities = 60/68 (88%), Positives = 62/68 (91%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 85.4 bits (202), Expect = 2e-17
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
RGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQ
Sbjct: 69 RGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 108
Score = 63.7 bits (148), Expect = 6e-11
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
ADCAVLI+ + TG FEAGISK+GQTREHALL FTLGV
Sbjct: 109 ADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGV 145
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 128 bits (310), Expect = 1e-30
Identities = 60/68 (88%), Positives = 62/68 (91%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERD 255
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 85.4 bits (202), Expect = 2e-17
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
RGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQ
Sbjct: 69 RGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 108
Score = 63.7 bits (148), Expect = 6e-11
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
ADCAVLI+ + TG FEAGISK+GQTREHALL FTLGV
Sbjct: 109 ADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGV 145
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 76.2 bits (179), Expect = 1e-14
Identities = 31/63 (49%), Positives = 46/63 (73%)
Frame = +1
Query: 67 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 246
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 247 ERD 255
ER+
Sbjct: 298 ERE 300
Score = 50.4 bits (115), Expect = 6e-07
Identities = 18/40 (45%), Positives = 31/40 (77%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
RGIT+ +A+ F + +++V ++D+PGH+DF+ NMI G +Q
Sbjct: 301 RGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQ 340
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 68.1 bits (159), Expect = 3e-12
Identities = 28/64 (43%), Positives = 46/64 (71%)
Frame = +1
Query: 61 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 240
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 241 KAER 252
+ ER
Sbjct: 158 EEER 161
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 374 ADCAVLIVAAGTGEFEAGISKNGQTREHALLDFTLGV 484
AD VL+++A GEFE G + GQTREH L TLGV
Sbjct: 203 ADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGV 239
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 374
+G T+++ FET TI+DAPGH+ ++ NMI+G SQ
Sbjct: 163 KGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQ 202
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 50.4 bits (115), Expect = 6e-07
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQL 377
RGITI A ++ET+K + +D PGH D++KNMITG +Q+
Sbjct: 114 RGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQM 154
Score = 32.7 bits (71), Expect = 0.13
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTT 123
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 50.0 bits (114), Expect = 8e-07
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQL 377
RGITI+ A ++ET + +D PGH D++KNMITG +Q+
Sbjct: 126 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQM 166
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 49 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 183
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 32.7 bits (71), Expect = 0.13
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGG 150
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMIT 362
R IT+ + + Y + +ID+PGH DF + T
Sbjct: 58 RAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVST 93
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.13
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTTGHLIYKCG 147
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
Score = 30.7 bits (66), Expect = 0.54
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDF 344
RGITI A K+ + IID PGH DF
Sbjct: 145 RGITITSAATTTFWDKHRINIIDTPGHVDF 174
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 30.3 bits (65), Expect = 0.71
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDF 344
+GITI A Y V IID PGH DF
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDF 146
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI 153
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 30.3 bits (65), Expect = 0.71
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 255 RGITIDIALWKFETSKYYVTIIDAPGHRDF 344
+GITI A Y V IID PGH DF
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDF 146
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI 153
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCG 147
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 174
N +I H+D GKST L+ G + R +++
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKE 120
Score = 28.3 bits (60), Expect = 2.9
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +3
Query: 255 RGITIDIAL----WKFETSKYYVTIIDAPGHRDFIKNMITGTSQLIALCSS*LPVPVNSK 422
RGITI + + +E + + + +ID PGH DF + S+ +A C L V S+
Sbjct: 132 RGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEV----SRSLAACEGALLVVDASQ 187
Query: 423 LVSLRTVKPV 452
V +T+ V
Sbjct: 188 GVEAQTLANV 197
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 40 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 159
D K EK N +I H+D GKST L+ G I K
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 291 ETSKYYVTIIDAPGHRDF 344
E S Y + +ID PGH DF
Sbjct: 131 EASGYLLNLIDTPGHVDF 148
>At5g27240.1 68418.m03249 DNAJ heat shock N-terminal domain-containing
protein
Length = 1104
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = -3
Query: 356 HVLDEISVSRSINDGNIVLASFEL----PESNI--DCDTTSRSAFSLSNTQAYLKDPLPI 195
H ++ S+S+S DG + + + PE+ + C T + F+ N +++ K +
Sbjct: 850 HGRNDESLSQSRGDGLLTQLNGNMKSSEPETRVPSSCKTVKENTFNFENQRSWDKFQIDQ 909
Query: 194 SWASFSN 174
WA +SN
Sbjct: 910 IWAIYSN 916
>At5g37055.1 68418.m04446 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 171
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 229 IPKHI*RILYPFPGPPSRTSRWYVC 155
+P H+ L GPPS +SR Y C
Sbjct: 110 LPSHVPTYLKAAVGPPSSSSRRYFC 134
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 198
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 198
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At1g78850.1 68414.m09191 curculin-like (mannose-binding) lectin
family protein low similarity to ser/thr protein kinase
from Zea mays [GI:2598067]; contains Pfam lectin
(probable mannose binding) domain PF01453
Length = 441
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 124 GHLIYKCGGIDKRT--IEKFEKEAQEMGKGSFKYAWVLDKLKAERDVVSQSILLSGSSKL 297
G L+++ +K I+ E + S K+ W + +V QS+ L+G +KL
Sbjct: 120 GRLVWQTNTANKGAVGIKILENGNMVIYDSSGKFVWQSFDSPTDTLLVGQSLKLNGRTKL 179
Query: 298 ASTMLPSL 321
S + PS+
Sbjct: 180 VSRLSPSV 187
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,319,656
Number of Sequences: 28952
Number of extensions: 201977
Number of successful extensions: 622
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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