Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20450
         (798 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   3.7  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   3.7  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   3.7  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   8.6  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 652 LDDVLVVSI*IYCREDSNDTGQRYSYSGSFCHEARQPGTDADSFV 786
           +DD+L  S  ++CR+  N     Y++S +  H       D  SF+
Sbjct: 104 IDDLL--SNAVFCRDRVNPYLFYYAFSVALLHRPDTQNLDLPSFI 146


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 471 SFVEMDSHEEKIYKP*GRPKNARRRTACANALRSCSARDWRRPNVASR 614
           S  E  SHE ++ +P G     R RTA  ++      R++ R     R
Sbjct: 65  SLSENRSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRSKYLCR 112


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 471 SFVEMDSHEEKIYKP*GRPKNARRRTACANALRSCSARDWRRPNVASR 614
           S  E  SHE ++ +P G     R RTA  ++      R++ R     R
Sbjct: 85  SLSENRSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRSKYLCR 132


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 672 DDEDIVELPKPLPKDICE 619
           DDED +E P P+   + E
Sbjct: 479 DDEDAIEKPAPVKISVQE 496


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,467
Number of Sequences: 336
Number of extensions: 3661
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)