Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20450
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc...   106   3e-24
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    28   1.8  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   4.1  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   7.2  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    26   7.2  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   9.5  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   9.5  

>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 240

 Score =  106 bits (255), Expect = 3e-24
 Identities = 56/130 (43%), Positives = 79/130 (60%)
 Frame = +3

Query: 255 PLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVAL 434
           PLD+LY++LIT   SNIL+D++TL L S+VV   C  L E E+L  AF +  AFDE  +L
Sbjct: 60  PLDELYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSL 119

Query: 435 GYRESVNLAQVRSFVEMDSHEEKIYKP*GRPKNARRRTACANALRSCSARDWRRPNVASR 614
           GYR++V+L Q+++++EM+SHEEKI +   R K      A     R     + ++   A R
Sbjct: 120 GYRDNVSLTQIKTYLEMESHEEKIQEIVSRNKEIE---ATEERKRRIKQLELQKKEAARR 176

Query: 615 RAHRCPSAVA 644
            A   PSA A
Sbjct: 177 AAQNLPSADA 186



 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 27/58 (46%), Positives = 46/58 (79%)
 Frame = +1

Query: 79  MVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVY 252
           MV++A ++  + GKA++SRQF EM++ R+E LL++FP L++   Q+T VE+++VR+VY
Sbjct: 1   MVVLAVSIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQNTTVESDNVRFVY 58


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 573 CSARDWRRPNVASRRAHRCPSAVAL 647
           C  ++WRRP   +  A +CPS +A+
Sbjct: 189 CGRQNWRRPVNFASHAKQCPSFLAM 213


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 218  VCCRPPVINLGKAASRPSMRAFVISTNW 135
            +CC P  +N+ +   +PS R+F     W
Sbjct: 2128 LCCDPSRLNIEQELQKPSGRSFACKKRW 2155


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
 Frame = +3

Query: 306  LEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVAL------GYRESVNLAQV 467
            L  L++L+  SR      V LT  E LN    +L  FD +++         R    LA+ 
Sbjct: 3744 LVSLQSLKSISRTQ----VDLTNDEFLNLMNFVLNLFDSLLSSIETATKNMRTFKELAET 3799

Query: 468  RSFVEMDSHEEKIYKP*GRPKNARRRTACANALRSCS 578
             SF+EM S   K+ +       + + ++    LRS S
Sbjct: 3800 SSFIEMSSCFSKVLRAFNLKFQSMKLSSLKEKLRSSS 3836


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 367 SCTQYSGTTLLKSLNVSRSSRMLLAFVVISNIYN 266
           SC      + L S+N + +SR LLA +V  +I N
Sbjct: 134 SCDSNENLSTLSSVNQNFNSRQLLATIVPESIQN 167


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -2

Query: 740 NDPLYEYLWPVSLESSRQ*IQMETTRTSSSYQSHCRRTSVSAAAGHVW 597
           +DPL + L P SLESS   I + +  +++ +    +R + S  + H +
Sbjct: 153 SDPLLDTLTPNSLESSFASISLNSFTSANEFIQFLKRLASSKLSIHTF 200


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 425 NLVERK*QVEGLVQDFSFCELYTIFW 348
           NLVER+ Q++GL++D S      + W
Sbjct: 897 NLVERRRQIKGLLKDNSATPTQRLQW 922


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
 Frame = +3

Query: 561 ALRSC-----SARDWRRPNVASRRAHR 626
           AL+SC     +ARDW R   A R+ HR
Sbjct: 840 ALKSCFYDLQNARDWYREVTADRKMHR 866


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,092
Number of Sequences: 5004
Number of extensions: 61201
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)