Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20450
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 108 6e-24
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153... 91 7e-19
05_03_0443 + 14057080-14057201,14058566-14058698,14058758-140587... 91 7e-19
01_06_1245 - 35693949-35694038,35694974-35695070,35695170-356952... 91 7e-19
02_05_0615 - 30364956-30365729,30365813-30366286 31 1.4
03_05_0493 + 24879554-24879674,24880272-24880339,24880761-24880811 30 2.5
09_02_0586 + 10948079-10948283,10948506-10948615 29 3.2
07_01_0139 - 1014952-1015165,1015271-1015350,1015420-1015629,101... 29 3.2
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 29 4.3
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 29 4.3
10_08_0946 - 21742295-21742933 28 9.9
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 28 9.9
03_01_0486 - 3699290-3699296,3699485-3699745,3699889-3700046,370... 28 9.9
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 108 bits (259), Expect = 6e-24
Identities = 53/100 (53%), Positives = 71/100 (71%)
Frame = +3
Query: 213 TYIC*NRVRQICLPPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQ 392
TY+ VR + P++ LY+LLIT K SNILEDL+TLRL S++VPEY L E V
Sbjct: 332 TYVETENVRYV-YQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKT 390
Query: 393 AFNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHEEKIYK 512
AF L+FAFDE ++LG +E+V + QV+ + EM+SHEEK +K
Sbjct: 391 AFELIFAFDEAISLGNKENVTVQQVKQYCEMESHEEKAHK 430
Score = 95.1 bits (226), Expect = 6e-20
Identities = 44/62 (70%), Positives = 56/62 (90%)
Frame = +1
Query: 67 KKNKMVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRY 246
K KMV++AA++ +KSGKALVSRQFV+M++ RIEGLLAAFPKL+ G+QHT+VETE+VRY
Sbjct: 282 KALKMVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRY 341
Query: 247 VY 252
VY
Sbjct: 342 VY 343
>08_02_0433 -
17114880-17114972,17115053-17115149,17115244-17115306,
17115765-17115918,17115992-17116178,17116567-17116871,
17117638-17117803,17118261-17118652,17119032-17119208,
17119565-17119604,17119762-17119809,17122393-17122428,
17122832-17123104
Length = 676
Score = 91.5 bits (217), Expect = 7e-19
Identities = 40/57 (70%), Positives = 53/57 (92%)
Frame = +1
Query: 82 VLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVY 252
V++AA++ +KSGKALVSRQ+V+MT+ RIEGLLAAFPKL+ G+QHT++ETE+VRYVY
Sbjct: 120 VVLAASIISKSGKALVSRQYVDMTRIRIEGLLAAFPKLVGNGKQHTYIETENVRYVY 176
Score = 63.7 bits (148), Expect = 2e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Frame = +3
Query: 324 LRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHEEK 503
L L + VPEYC L + V AF L+FAFDE ++LG +E V + QV+ + EMDS EE
Sbjct: 235 LNLNNVKVPEYCPSLDDDGVCKTAFELIFAFDEAISLGNKEKVTVQQVKEYCEMDSVEEM 294
Query: 504 IYK 512
YK
Sbjct: 295 EYK 297
>05_03_0443 +
14057080-14057201,14058566-14058698,14058758-14058797,
14059175-14059398,14059904-14059976,14060364-14060614,
14060892-14061060,14061307-14061611,14062023-14062209,
14062311-14062464,14063186-14063248,14063337-14063433,
14063530-14063619
Length = 635
Score = 91.5 bits (217), Expect = 7e-19
Identities = 41/58 (70%), Positives = 54/58 (93%)
Frame = +1
Query: 79 MVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVY 252
+V++AA++ +KSGKALVSRQFV+M++ RIEGLLAAFPKL+ G+QHT+VETE+VRYVY
Sbjct: 85 LVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVY 142
Score = 65.7 bits (153), Expect = 4e-11
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +3
Query: 258 LDKLYMLLITTKASN-ILEDLETLRLFS-RVVPEYCVQLTETEVLNQAFNLLFAFDEIVA 431
L KL + ++T+A+ L L++F VPEY L E V AF L+FAFDE +
Sbjct: 170 LSKLALRAVSTEATLWCLAGALVLQVFLFPQVPEYSPSLDEEGVCKTAFELIFAFDEAIC 229
Query: 432 LGYRESVNLAQVRSFVEMDSHEEKIYK 512
LG +E+V + QV+ + EM+SHEEK +K
Sbjct: 230 LGNKENVTVQQVKQYCEMESHEEKAHK 256
>01_06_1245 -
35693949-35694038,35694974-35695070,35695170-35695232,
35696079-35696232,35696303-35696489,35697001-35697314,
35698079-35698220,35698445-35698656,35699068-35699244,
35699589-35699628,35700056-35700155,35701731-35701804
Length = 549
Score = 91.5 bits (217), Expect = 7e-19
Identities = 40/62 (64%), Positives = 56/62 (90%)
Frame = +1
Query: 67 KKNKMVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRY 246
++ +V++AA++ +KSGKALVSRQFV+M++ RI+GLLAAFPKL+ G+QHT+VETE+VRY
Sbjct: 54 RQYSLVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRY 113
Query: 247 VY 252
VY
Sbjct: 114 VY 115
Score = 55.2 bits (127), Expect = 6e-08
Identities = 24/44 (54%), Positives = 34/44 (77%)
Frame = +3
Query: 381 VLNQAFNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHEEKIYK 512
V AF LLFAF E ++LG +E+V +AQV+ + EM+SHEEK++K
Sbjct: 133 VCKAAFELLFAFIEAISLGNKENVTVAQVKQYCEMESHEEKLHK 176
>02_05_0615 - 30364956-30365729,30365813-30366286
Length = 415
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 79 MVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGG 207
++L+A TVC S L +RQ+++ T AR A++ GG
Sbjct: 22 LLLVAFTVCNYSSLKLSTRQYIDGTSARSSSTRASYASGGGGG 64
>03_05_0493 + 24879554-24879674,24880272-24880339,24880761-24880811
Length = 79
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +1
Query: 283 SRQRLVTSWKIWRH*DSSAEWYQNIVYSSQKLKS*TRPSTCYLRSTRLSLLG 438
S L TSW +W + S W + VY ++KS TR L ++LLG
Sbjct: 26 SSSSLPTSWGVWANLGSINTW-EKCVYGDSEIKS-TRNGKVQLGIEHMNLLG 75
>09_02_0586 + 10948079-10948283,10948506-10948615
Length = 104
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 608 GHVWPPPISRAATP*RVRACGSPPRVLGSALR 513
GH WPPP+ +T RV P G ALR
Sbjct: 42 GHDWPPPVKDDSTACRVDVVPYPGHQQGLALR 73
>07_01_0139 -
1014952-1015165,1015271-1015350,1015420-1015629,
1015925-1016044,1016650-1016709,1017129-1017204,
1018189-1018352,1018428-1018490,1018815-1018902,
1018997-1019647,1019965-1020449
Length = 736
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 632 RTSVSAAAGHVWPPPISRAATP*RVRACGSPP 537
R S SAA GH PI+R+A+ RA PP
Sbjct: 93 RASTSAAVGHPVSIPIARSASSAEFRAVHQPP 124
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 315 LETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAF-DEIVALGYRESVNLAQVRSFV 479
LE L+ +RV +Y L E + L + F L++ DE++ GY ++ + ++S++
Sbjct: 82 LELLQRIARVTKDYLGVLNE-DSLRKNFILVYELLDEVIDFGYPQTTSTEVLKSYI 136
>03_05_1091 +
30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = -2
Query: 548 GSPPRVLGSALRLVNLFLVRVHFNKRTDLR*IDAFSVPKSDNLVERK*QVEGLVQDF 378
G PP VLGSA V L R ID F P SD + + + L+ DF
Sbjct: 144 GQPPDVLGSAADEVLAILNNDKIKSPEKKRGIDKFLDPISDQMFHQFVSIGKLITDF 200
>10_08_0946 - 21742295-21742933
Length = 212
Score = 27.9 bits (59), Expect = 9.9
Identities = 28/83 (33%), Positives = 34/83 (40%)
Frame = +3
Query: 519 GRPKNARRRTACANALRSCSARDWRRPNVASRRAHRCPSAVALVAXXXXXXXXXXXXXXX 698
G A RR ACA A R+C+A R +A R A R PSA A
Sbjct: 5 GAGAGAIRRAACAAADRACAAARGARRALA-RFAPR-PSAFGAAADAEAAAVRAVRNLRT 62
Query: 699 FQRHRPEILVQWVVLP*SSAAGH 767
F+ H + QW +L S A H
Sbjct: 63 FRFHYAAL--QWALLLASLAPRH 83
>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = +3
Query: 453 NLAQVRSFVEMDSHEEKIYKP*GRPKNARRRTACANALRSCSARDWRRPNVASRRAHRCP 632
N+ Q ++ V +EK P G+ KN +RT C+ S+ + + R P
Sbjct: 915 NVTQKQTGVHSPMVDEKSNSPEGQHKNTTKRTTCSLVKEKASSPEGQHEKTTKRTTCALP 974
>03_01_0486 -
3699290-3699296,3699485-3699745,3699889-3700046,
3700265-3700469,3701285-3701574,3701648-3701810,
3701897-3701985,3702086-3702153,3702560-3702722
Length = 467
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 160 RIEGLLAAFPKLMTGGRQHTFVETESVRYVYHH 258
R+E L AAFPKL+ R+ T ++ E++R +H
Sbjct: 315 RLEPLQAAFPKLV---RKETLLDLEALRQFQNH 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,093,957
Number of Sequences: 37544
Number of extensions: 460182
Number of successful extensions: 1495
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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