Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20450
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)             142   4e-34
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)                      29   3.3  
SB_53547| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score =  142 bits (343), Expect = 4e-34
 Identities = 65/86 (75%), Positives = 77/86 (89%)
 Frame = +3

Query: 255 PLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVAL 434
           PL+KLYMLLITTK SNILEDLETLRLFSRV+PEYC  + E+E+   AF L+FAFDEIVAL
Sbjct: 531 PLEKLYMLLITTKHSNILEDLETLRLFSRVIPEYCRAMEESEIGEHAFELIFAFDEIVAL 590

Query: 435 GYRESVNLAQVRSFVEMDSHEEKIYK 512
           GYRE+VNLAQ+R+F EMDSHEEK+++
Sbjct: 591 GYRENVNLAQIRTFTEMDSHEEKVFQ 616



 Score = 98.7 bits (235), Expect = 5e-21
 Identities = 46/60 (76%), Positives = 55/60 (91%), Gaps = 3/60 (5%)
 Frame = +1

Query: 82  VLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGG---RQHTFVETESVRYVY 252
           VL+AA +CTK+GKA++SRQFVEMT++RIEGLL+AFPKLMT G   +QHTFVETESVRYVY
Sbjct: 470 VLLAAAICTKNGKAIISRQFVEMTRSRIEGLLSAFPKLMTSGSSVKQHTFVETESVRYVY 529


>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1182

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -3

Query: 457 RLTLSLYPRATISSNANSKLKAWFKTSVSVSCTQYSGTTLLKSLNVSRSS 308
           +LTL+L     + S +N KL++  K SVS+S    S  +  K L V  SS
Sbjct: 605 KLTLNLEKTKCMLSGSNRKLESKIKLSVSISNYNVSNVSNFKYLGVFISS 654


>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1691

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 753  SFMAERPTVRVSLAGVVGIFSAIDSDGDDEDIVELPKPL 637
            SF+   P ++ ++  + G  S  DSD DD+D++ L  PL
Sbjct: 1108 SFIMNTPDLKTNVKQIYGDLS--DSDFDDDDVILLESPL 1144


>SB_53547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1381

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 546  TACANALRSCSARDWRRPNVASRRAHRCPSAV 641
            T CA ALR   AR W   N+  +R+HR P  +
Sbjct: 1216 TKCAKALRQ--ARYWSPKNIPFKRSHRGPDVM 1245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,668,340
Number of Sequences: 59808
Number of extensions: 503200
Number of successful extensions: 3086
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3085
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)