Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20450
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical pr...   132   4e-31
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    33   0.18 
AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : short...    30   2.2  
AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : short...    30   2.2  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF039044-13|AAG24128.2|  435|Caenorhabditis elegans Hypothetical...    28   8.9  

>U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical
           protein C13B9.3 protein.
          Length = 515

 Score =  132 bits (318), Expect = 4e-31
 Identities = 62/102 (60%), Positives = 80/102 (78%)
 Frame = +3

Query: 204 RTATYIC*NRVRQICLPPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEV 383
           R  T++  + VR +   PLD +Y++L+TTK SNILEDLETLRLF RV+PEYC    E E+
Sbjct: 50  RQHTFVETDSVRYV-YHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEI 108

Query: 384 LNQAFNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHEEKIY 509
           L   F+L+FAFDE+V LGYRESVNLAQ+R+F EMDSHEE+++
Sbjct: 109 LAHDFDLIFAFDEVVTLGYRESVNLAQIRTFTEMDSHEERVF 150



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 40/65 (61%), Positives = 51/65 (78%), Gaps = 6/65 (9%)
 Frame = +1

Query: 79  MVLIAATVCTKSGKALVSRQFV-EMTKARIEGLLAAFPKLM-----TGGRQHTFVETESV 240
           MVLIAA + +K+GK LV+RQFV +M ++R+EGL+ AFPKL+        RQHTFVET+SV
Sbjct: 1   MVLIAACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSV 60

Query: 241 RYVYH 255
           RYVYH
Sbjct: 61  RYVYH 65


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 19/83 (22%), Positives = 38/83 (45%)
 Frame = +3

Query: 267 LYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 446
           +Y++ I+ K +N++  L  L     V  EY   L E  V +    +   FDE++  GY +
Sbjct: 65  VYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDFGYPQ 124

Query: 447 SVNLAQVRSFVEMDSHEEKIYKP 515
           +     ++ F+    +  +  +P
Sbjct: 125 TTESKILQEFITQQGNRLETVRP 147


>AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform b protein.
          Length = 435

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/71 (22%), Positives = 34/71 (47%)
 Frame = +3

Query: 267 LYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 446
           +++  +T +  N     E L+ F+  +  Y  +L E  V N    +    DEI+  GY +
Sbjct: 63  VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122

Query: 447 SVNLAQVRSFV 479
           + +   +++F+
Sbjct: 123 NTDPGVLKTFI 133


>AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform a protein.
          Length = 441

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/71 (22%), Positives = 34/71 (47%)
 Frame = +3

Query: 267 LYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 446
           +++  +T +  N     E L+ F+  +  Y  +L E  V N    +    DEI+  GY +
Sbjct: 63  VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122

Query: 447 SVNLAQVRSFV 479
           + +   +++F+
Sbjct: 123 NTDPGVLKTFI 133


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +3

Query: 201 RRTATYIC*NRVRQICLPPLDKLYMLLITTKASNILEDLETLRLFS--RVVPEYCVQLTE 374
           +R  T I   R   I  PP D    L I + A ++LED +T+RL S  ++ PE   +L +
Sbjct: 240 QRHITSIWSRRDVSIVYPPCDVEAFLNIESVAESLLEDTKTVRLLSVGQIRPEKNHKL-Q 298

Query: 375 TEVLN 389
            EVL+
Sbjct: 299 LEVLH 303


>AF039044-13|AAG24128.2|  435|Caenorhabditis elegans Hypothetical
           protein F48G7.12 protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 270 YMLLITTKASNILEDLETLRLFSR 341
           Y  ++T KA +++EDLE   L+SR
Sbjct: 399 YQEILTEKAEHLMEDLERWHLYSR 422


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,951,276
Number of Sequences: 27780
Number of extensions: 366082
Number of successful extensions: 974
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)