Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20450
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05010.1 68418.m00532 clathrin adaptor complexes medium subun...   112   3e-25
At5g13760.1 68418.m01604 expressed protein similar to unknown pr...    30   2.0  
At2g40020.1 68415.m04918 expressed protein                             29   2.7  
At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   3.6  
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun...    28   6.2  
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun...    28   6.2  
At1g66330.2 68414.m07533 senescence-associated family protein si...    28   6.2  
At1g66330.1 68414.m07532 senescence-associated family protein si...    28   6.2  

>At5g05010.1 68418.m00532 clathrin adaptor complexes medium
           subunit-related contains pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 527

 Score =  112 bits (269), Expect = 3e-25
 Identities = 52/100 (52%), Positives = 75/100 (75%)
 Frame = +3

Query: 213 TYIC*NRVRQICLPPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQ 392
           TYI    VR +   P++ L++LL+TTK SNILEDL TL L S++VPEY + L E  +   
Sbjct: 47  TYIETENVRYV-YQPIEALFLLLVTTKQSNILEDLATLTLLSKLVPEYSMSLDEEGISRA 105

Query: 393 AFNLLFAFDEIVALGYRESVNLAQVRSFVEMDSHEEKIYK 512
           +F L+FAFDE+++LG++ESV +AQV+ + EM+SHEEK++K
Sbjct: 106 SFELIFAFDEVISLGHKESVTVAQVKQYCEMESHEEKLHK 145



 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 37/58 (63%), Positives = 50/58 (86%)
 Frame = +1

Query: 79  MVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVY 252
           MV++AA +  KSGK +VSR +V+M++ RIEGLLAAFPKL+  G+QHT++ETE+VRYVY
Sbjct: 1   MVVLAAAIVVKSGKVIVSRHYVDMSRIRIEGLLAAFPKLVGMGKQHTYIETENVRYVY 58


>At5g13760.1 68418.m01604 expressed protein similar to unknown
           protein (gb AAF63775.1)
          Length = 569

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 318 ETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGY 440
           +T  +F+    +    L  T+  N+ F LLF F ++VA+G+
Sbjct: 118 QTRSIFTPTPQQTLASLNSTKYTNKFFLLLFIFHKVVAIGF 158


>At2g40020.1 68415.m04918 expressed protein
          Length = 228

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/23 (52%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
 Frame = -1

Query: 684 DSDGDDEDIVEL-PKPLPKDICE 619
           DSDGDD++I++L P+PL +++ E
Sbjct: 187 DSDGDDDEIIQLTPEPLCEELQE 209


>At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavanone 3-hydroxylase
           [Persea americana][GI:727410]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 341

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 404 QVEGLVQDFSFCELYTIFWYHSAEESQCLQIF 309
           + + + +DF++ E Y  FW  + ++  CL+ F
Sbjct: 307 ETKPVYKDFTYAEYYKKFWSRNLDQEHCLENF 338


>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 451

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 315 LETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAF-DEIVALGYRESVNLAQVRSFV 479
           LE L+  +RV+ +Y   L E +   + F L++   DE++  GY ++ +   ++S++
Sbjct: 83  LELLQRIARVIKDYLGVLNE-DSFRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYI 137


>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 380

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 315 LETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAF-DEIVALGYRESVNLAQVRSFV 479
           LE L+  +RV+ +Y   L E +   + F L++   DE++  GY ++ +   ++S++
Sbjct: 83  LELLQRIARVIKDYLGVLNE-DSFRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYI 137


>At1g66330.2 68414.m07533 senescence-associated family protein
           similar to senescence-associated protein (GI:12836895)
           [Ipomoea batatas]
          Length = 417

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -3

Query: 379 SVSVSCTQYSGTTLLKSLNVSRSSRMLLAFV 287
           +++VS    +   L+KS+N SRS R+LLA+V
Sbjct: 2   ALNVSKVVPNSPILVKSVNASRSRRVLLAYV 32


>At1g66330.1 68414.m07532 senescence-associated family protein
           similar to senescence-associated protein (GI:12836895)
           [Ipomoea batatas]
          Length = 417

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -3

Query: 379 SVSVSCTQYSGTTLLKSLNVSRSSRMLLAFV 287
           +++VS    +   L+KS+N SRS R+LLA+V
Sbjct: 2   ALNVSKVVPNSPILVKSVNASRSRRVLLAYV 32


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,959,812
Number of Sequences: 28952
Number of extensions: 338897
Number of successful extensions: 938
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)