Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20444
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    28   1.2  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    28   1.6  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    27   2.8  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.5  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    26   6.5  
SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...    25   8.6  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    25   8.6  

>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 433 CGRLMSIGAPHHCSL 477
           CG L++I  PHHCS+
Sbjct: 261 CGTLVAIPTPHHCSI 275


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 562 PPVA-LFTALVWSLLGFDGIWLF*NVRGN 645
           PP A L  ALV  L G+DG +LF N+  N
Sbjct: 108 PPFAKLLLALVAKLAGYDGHYLFDNIGDN 136


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 23  TPCCTACXARSLPSWR 70
           TP CT C  R+ P WR
Sbjct: 632 TPTCTNCQTRTTPLWR 647


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/70 (25%), Positives = 26/70 (37%)
 Frame = +1

Query: 310 SSVRSADVQPHAPLP*LRSLPRAVR*YLPARPATVVEEPPPCGRLMSIGAPHHCSLRASC 489
           SS  S +    AP P  R   +    + P   +T+   PPP     +   P+  S     
Sbjct: 59  SSSGSGNAYSQAPYPPARPTSQRPNSWQPGNASTMYASPPPSSNYNTAKPPYQTS--QFY 116

Query: 490 VQPLSLYRDP 519
            +P S Y  P
Sbjct: 117 ARPQSSYAPP 126


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 462 GRADGHQPTAWRRLLNYSG 406
           G A   QPT+ R+L NYSG
Sbjct: 140 GYAKNRQPTSSRQLANYSG 158



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 343 HAVGHQPTGQRRLLNYSG 290
           +A   QPT  R+L NYSG
Sbjct: 141 YAKNRQPTSSRQLANYSG 158


>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +3

Query: 585 SSLEPPRIRWDLVILKRARKFTSKANVVAFSILYCLDPASSRRVSFKRLRR 737
           +++ P     +L ++  A +  S  +    +++Y LD  S RR+ F+   R
Sbjct: 214 TTISPGEYFGELALMYNAPRAASVVSKTPNNVIYALDRTSFRRIVFENAYR 264


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 433 MEEAPQLQWRGARVNINGPHGGGSSTTA 350
           +E+ P+ + R   + I+GP G G ST A
Sbjct: 15  LEKQPKPEGRPFILGISGPQGSGKSTLA 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,784
Number of Sequences: 5004
Number of extensions: 58792
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)