Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20444
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0239 - 14680013-14680291,14680560-14680649,14680654-146810... 33 0.24
01_06_0382 - 28884450-28884662,28884681-28885469 33 0.31
09_02_0572 - 10796997-10797152,10797259-10797412,10798023-107980... 30 1.7
03_02_0171 + 6126685-6127107,6127237-6127581,6127701-6127997,612... 30 1.7
01_06_0142 + 26909463-26909828 30 1.7
04_04_0432 + 25157722-25157950,25158045-25158659,25159298-251593... 30 2.2
12_01_0866 - 8243105-8243485,8244219-8244323 29 2.9
07_02_0001 + 11646955-11647085,11647169-11647271,11647369-11647407 29 2.9
12_02_0634 + 21416205-21416954 29 3.9
11_06_0152 + 20669949-20670326,20670887-20670997,20671079-206712... 29 3.9
08_01_0855 + 8407411-8407628,8408231-8408267 29 3.9
05_02_0022 + 5682045-5682301,5682477-5682720 29 3.9
08_02_1084 - 24232968-24234779 29 5.1
07_03_0287 - 16283460-16283658,16283696-16283802 29 5.1
04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348 29 5.1
02_05_0567 + 30029862-30030136,30030299-30030384,30031663-300318... 29 5.1
09_03_0107 + 12412772-12413097,12413460-12413732,12414163-12414247 28 6.8
09_03_0105 + 12400722-12401041,12401427-12401699,12401788-12401827 28 6.8
08_01_0399 + 3524723-3525272,3525468-3525544,3526816-3526861,352... 28 6.8
02_05_1071 - 33876061-33877308,33877593-33877898 28 6.8
01_06_0191 - 27334412-27335155 28 6.8
08_02_0292 - 15420378-15421229 28 9.0
08_01_0503 + 4364678-4364976,4365320-4365595,4366091-4366586 28 9.0
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632... 28 9.0
>08_02_0239 -
14680013-14680291,14680560-14680649,14680654-14681047,
14682052-14682137,14683327-14683465,14683470-14683585
Length = 367
Score = 33.1 bits (72), Expect = 0.24
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = -2
Query: 408 GGARG*ISTDRTGEAPQLRQWCMRLDISRPDRGGS-STTVAGRAGXYQQTARGGSSITAV 232
GG+RG + R R D+ P R G T +GR ++TAR +S
Sbjct: 7 GGSRGRRGSSRRRRGSGSSAVLTRRDLLLPHRRGQRGTRDSGRGDGSEETARVAASAVEG 66
Query: 231 GHAVGHQPTGHRKLLSGGERWRK 163
G G + TG + GGE R+
Sbjct: 67 GAGRGARGTGLLRRRCGGEEMRE 89
>01_06_0382 - 28884450-28884662,28884681-28885469
Length = 333
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 464 WGAPMDINRPHGGGSSTTVAGRAGKYQRTARGRLLNYGSGACGWTS 327
W + + G S G+ G Y + GR+L +G A GWT+
Sbjct: 36 WSYHLPLPDGVSGAESLAFDGKDGLYTGVSDGRVLKWGGSAAGWTT 81
>09_02_0572 -
10796997-10797152,10797259-10797412,10798023-10798065,
10798470-10798588,10798718-10798926,10799534-10799583,
10799610-10799718
Length = 279
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 78 EGPRAIKGASPPALPTALVEETPSCSRWIFSSALRRL 188
+G ++ A P + T ++ E P C W+ S LR L
Sbjct: 171 KGLSGVRAADPGVVQTGIMRELPPCLSWLALSVLRLL 207
>03_02_0171 +
6126685-6127107,6127237-6127581,6127701-6127997,
6129763-6129990,6130716-6131036
Length = 537
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 440 RPHGGGSSTTVAGRAGKYQRTARGRLLNYGS 348
RP GGG T AGRA + QR A +N G+
Sbjct: 28 RPAGGGRPTRSAGRAQQQQRMAAPGAVNLGA 58
>01_06_0142 + 26909463-26909828
Length = 121
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 473 LQWWGAPMDINRPHGGGSSTTVAGRAGKYQRTA-RGRLLNYGS 348
+QWW + RP GG GR G ++ T RG L GS
Sbjct: 48 VQWWRSVWGGGRPDGGSKVEGGGGRCGVHEVTGRRGAWLGLGS 90
>04_04_0432 +
25157722-25157950,25158045-25158659,25159298-25159380,
25159906-25159979,25160101-25160151,25160295-25160371,
25160856-25161595
Length = 622
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = -2
Query: 423 LLNYSGGARG*ISTDRTGEAPQLRQWC---MRLDISRPDRGG--SSTTVAGRAGXYQQTA 259
L+ SGG R ++ D GEAP+L + D+ GG S + G AG Y
Sbjct: 95 LVGSSGGGRRTVAGDGVGEAPKLENFLDGNSFSDVHGQAAGGYLYSGSAVGGAGGYSNGG 154
Query: 258 RGGSSI 241
GG +I
Sbjct: 155 CGGGTI 160
>12_01_0866 - 8243105-8243485,8244219-8244323
Length = 161
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 403 PATVVEEPPPCGRLMS-IGAPHHCSLRASCV 492
PAT+ E PP C RL + APHH A C+
Sbjct: 73 PATL-EHPPLCCRLRKGVAAPHHTKPVARCI 102
>07_02_0001 + 11646955-11647085,11647169-11647271,11647369-11647407
Length = 90
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -1
Query: 532 D*SDGDR-GRDLTAA-RRRLLNYNGGARRWTST 440
D DGD G+D+ RRRL +++GG RWT +
Sbjct: 23 DGMDGDEVGQDVDILYRRRLASFHGGGLRWTGS 55
>12_02_0634 + 21416205-21416954
Length = 249
Score = 29.1 bits (62), Expect = 3.9
Identities = 24/71 (33%), Positives = 31/71 (43%)
Frame = -2
Query: 324 RPDRGGSSTTVAGRAGXYQQTARGGSSITAVGHAVGHQPTGHRKLLSGGERWRKSTDCTK 145
R DRG + AGR G A GG + A G A G G ++ + G + R S T+
Sbjct: 149 RADRGRGGSCDAGRGGG----AAGGCTGEA-GGAAGGGRLGEKRRATAGRQLRGSPRETE 203
Query: 144 GFLRLERWGXR 112
G RW R
Sbjct: 204 GKPGWRRWRRR 214
>11_06_0152 + 20669949-20670326,20670887-20670997,20671079-20671280,
20671393-20671675,20672145-20672234,20672366-20672473,
20672595-20672975,20673250-20673324,20673685-20673797,
20676233-20676742,20676807-20677300
Length = 914
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -2
Query: 315 RGGSSTTVAGRAGXYQQTARGGSSITAVGHAVGHQPTGHRKLLSGGE 175
RGG G Q ARGG G A P ++L+GGE
Sbjct: 861 RGGGGVRAVGGVPPVQGPARGGGGGGVQGRADEAAPADAERVLAGGE 907
>08_01_0855 + 8407411-8407628,8408231-8408267
Length = 84
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = -3
Query: 467 WWGAPMDINRPHGGGSSTTVAGRAGKYQRTARGRLLNYGSGACGWTSADRTEEA 306
WW +P G G + G G ++++ L G GW AD+ +A
Sbjct: 29 WWSSPAAAGIGVGRGRAAVGTGGDGTWKKSGEAADLVRGYDLFGWQIADKVGDA 82
>05_02_0022 + 5682045-5682301,5682477-5682720
Length = 166
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 110 TRXPHRSSRRNPFVQSVDFLQRSPPLSSFLCPVG*CPTACP 232
T P +SR +P+ + + SPPL +FL P+G P P
Sbjct: 11 TSAPPTASRCHPWRRRGRARRSSPPLLTFLFPIGLLPDRLP 51
>08_02_1084 - 24232968-24234779
Length = 603
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -3
Query: 356 YGSGACGWTSADRTEEAPQLQWRGARVYINRPHEEAPQLRQWGMRLDINRPDIG 195
YG G G +R E P +W GA ++ P ++W R + D+G
Sbjct: 462 YGEG--GSHGKERAERPPDREWSGASERRREREKDIPPAQEWPDRKHRDERDMG 513
>07_03_0287 - 16283460-16283658,16283696-16283802
Length = 101
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/67 (31%), Positives = 26/67 (38%)
Frame = -1
Query: 403 GARVNINGPHGGGSSTTAVVHAVGHQPTGQRRLLNYSGGARGXISTDRTRRLLNYGSGAC 224
G R +GP GGG T+ V A + G GG G R R GSGA
Sbjct: 11 GPRGGDDGPGGGGEKTSGVDEAAEERGEGGS---GGGGGGGGDGGPSRRSRWRGGGSGAA 67
Query: 223 GWTSTDR 203
+ +R
Sbjct: 68 AVETAER 74
>04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348
Length = 662
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -3
Query: 440 RPHGGGSSTTVAGRAGKYQRTARGRLLNYGSGACGWTSADRTEEAPQL 297
RP+ GS T RA R + R+L G GW D ++ +L
Sbjct: 508 RPNSSGSQTVQMARALLAARHSGERILRCWGGGTGWAVEDAKDKIAKL 555
>02_05_0567 +
30029862-30030136,30030299-30030384,30031663-30031811,
30032581-30032685,30032779-30032895,30033251-30033394,
30033519-30033668
Length = 341
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = -3
Query: 356 YGSGAC----GWTSADRTEEAPQLQWRG 285
Y +GA GWTSA ++E +P WRG
Sbjct: 152 YSNGAAADMNGWTSAFQSEGSPAYSWRG 179
>09_03_0107 + 12412772-12413097,12413460-12413732,12414163-12414247
Length = 227
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 458 APMDINRPHGGGSSTTVAGRA-GKYQRTARGRLLNYGSGACGWT 330
A M + P G S GR G Y + GR+L + G GWT
Sbjct: 57 AVMTLPAPVTGPESLAFDGRGDGPYTGGSDGRILRWRGGRLGWT 100
>09_03_0105 + 12400722-12401041,12401427-12401699,12401788-12401827
Length = 210
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 458 APMDINRPHGGGSSTTVAGRA-GKYQRTARGRLLNYGSGACGWT 330
A M + P G S GR G Y + GR+L + G GWT
Sbjct: 55 AVMTLPAPVTGPESLAFDGRGDGPYTGGSDGRILRWRGGRLGWT 98
>08_01_0399 +
3524723-3525272,3525468-3525544,3526816-3526861,
3527121-3527235,3528252-3528306,3528432-3528557
Length = 322
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 447 HQPTAWRRLLNYSGGARG*ISTDRTGEAPQLRQWCMRL 334
H AWRR GGARG + R AP++R W L
Sbjct: 132 HVAGAWRRGGCGGGGARGVLPAKRAPRAPRMR-WTSTL 168
>02_05_1071 - 33876061-33877308,33877593-33877898
Length = 517
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 573 AFHRSSLEPPRIRWDLVILKRARKFTSKANVVAF 674
A R + PP +R D+V L+RAR++ ++++
Sbjct: 73 ARERGRVSPPELRRDVVRLRRARRYEQALEILSW 106
>01_06_0191 - 27334412-27335155
Length = 247
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 327 SRPDRGGSSTTVAGRAGXYQQTARGGSSITAVGHAV 220
++P +GGS+ +G AG G +S AVG V
Sbjct: 201 AKPKKGGSTEAASGPAGAEDAEPTGAASARAVGWGV 236
>08_02_0292 - 15420378-15421229
Length = 283
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = -1
Query: 601 GGSRLER*KARLVDPPTARRRLFD*SDGDRGRDLTAARRRLLNYNGGAR 455
G R ER + P+ RRR S G R R + RRR G R
Sbjct: 14 GAGRRERRRGSAAAEPSGRRRELTTSGGGRSRRRSRTRRRRARRRGEER 62
>08_01_0503 + 4364678-4364976,4365320-4365595,4366091-4366586
Length = 356
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 395 GKYQRTARGRLLNYGSGACGWTS 327
G Y + GR+L +G A GWT+
Sbjct: 70 GPYTGVSDGRVLRWGGAAAGWTT 92
>04_03_0278 -
13761999-13762462,13762628-13762727,13763065-13763289,
13763347-13763415,13763605-13764432,13764706-13764779,
13818821-13818905
Length = 614
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 579 HRSSLEPPRIRWDLVILKRARKFTSKANVVAFSILYCLDPASSRRVS 719
HRS L PP + + L + S+ + A S L+P ++RR++
Sbjct: 518 HRSRLSPPAVAFALTSASKPLPSGSRTIIKAASAACFLEPLTNRRLT 564
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,280,826
Number of Sequences: 37544
Number of extensions: 632062
Number of successful extensions: 2239
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2236
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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