Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20444
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_48283| Best HMM Match : ABC-3 (HMM E-Value=2.4)                     31   1.3  
SB_49295| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               28   9.1  

>SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 327 SRPDRGGSSTTVAGRAGXYQQTARGGSSITAVGHAVGHQPTGHRKLLSGGER 172
           SRP   G +  +  R+G  +QT+R  S +   G  V    T   KL   G+R
Sbjct: 568 SRPPSRGGAIDLTSRSGVLEQTSRPTSRVGVCGRPVSPPRTREAKLCDDGKR 619


>SB_48283| Best HMM Match : ABC-3 (HMM E-Value=2.4)
          Length = 745

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +3

Query: 333 PTACTTAVVEEPPPCGPLIFTRAPRHCS*GASSMRSVDVHRRA 461
           PT CT  +   PP C  L F     HC+    S  SV  H  A
Sbjct: 389 PTTCTKIIQILPPNCVQLCFESTHAHCTSFLRSDYSVQCHTHA 431


>SB_49295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 146 FVQSVDFLQRSPPLSSFLCPVG*CPTACPTAVIEEPPRAVC*YXPARP-ATVVEEPPLS 319
           F  S D L  S PL++ + P G            EPP AV  Y P  P A    EPPL+
Sbjct: 195 FYVSNDALLMSTPLATKMSPPGHYNEPPLAITAYEPPLAVTVYEPLPPLAITAYEPPLA 253


>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 1074

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 421 EPPPCGRLMSIGAPH-HCSLRASCVQPLSLYRD 516
           +PP C  ++ +  PH    LR  CV P  +Y++
Sbjct: 431 QPPICAEMLQVRKPHLGPYLRFGCVSPRHVYKE 463


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,673,755
Number of Sequences: 59808
Number of extensions: 556541
Number of successful extensions: 1717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)