Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20444
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-5|CAA92975.1|  468|Caenorhabditis elegans Hypothetical pr...    31   0.86 
AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical ...    31   1.1  
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    30   2.0  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    30   2.0  
Z81040-2|CAB02782.2|  466|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AC024876-4|AAU05555.1|  825|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z81134-7|CAD56602.1|  879|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U23514-4|AAY86231.1|  180|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AL117202-32|CAD56611.1|  879|Caenorhabditis elegans Hypothetical...    28   8.0  

>Z68751-5|CAA92975.1|  468|Caenorhabditis elegans Hypothetical
           protein T05E11.5 protein.
          Length = 468

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 552 VGGSTSRAFHRSSLEPPRIRWDLVILKRARKFTSKANVVAFSILYCLDPASSR 710
           +G   S  + R++++  R+    + ++ ARKF   A++V F +     PA+ R
Sbjct: 40  IGSIRSAQYIRTNIDKKRLIEGSITMREARKFPISASLVLFGLYLFFKPAAER 92


>AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical
           protein B0205.10 protein.
          Length = 455

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 277 TRAPRHCS*GASSVRSADVQPHAPLP*LRSLPRAVR*YLPARPATVVEEPPP 432
           TR+ R  +   SS ++AD QP AP P   S+ +      PA  A  V++P P
Sbjct: 35  TRSTRTTTQKRSSTKAADQQPAAPAPAPASVQQQPEAPAPAPTAPDVQQPGP 86


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 25/114 (21%), Positives = 48/114 (42%)
 Frame = -1

Query: 487 RRLLNYNGGARRWTSTDRMEEAPQLQWRGARVNINGPHGGGSSTTAVVHAVGHQPTGQRR 308
           +R + Y GG +++      E    ++ +    N++     GSS+         +   +++
Sbjct: 422 KRKIKYEGGNKKYEQVHIKERTAVIRGKNQLENVSSESASGSSSVDTYPDFSDEERKKKK 481

Query: 307 LLNYSGGARGXISTDRTRRLLNYGSGACGWTSTDRT*EATKRRRALEKIHRLHE 146
                       S +R+++     S A GW STD + E T+RRR+    +R  E
Sbjct: 482 RPK---------SPNRSKK----DSRAFGWDSTDESDEDTRRRRSGRSQNRSSE 522


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 25/114 (21%), Positives = 48/114 (42%)
 Frame = -1

Query: 487 RRLLNYNGGARRWTSTDRMEEAPQLQWRGARVNINGPHGGGSSTTAVVHAVGHQPTGQRR 308
           +R + Y GG +++      E    ++ +    N++     GSS+         +   +++
Sbjct: 422 KRKIKYEGGNKKYEQVHIKERTAVIRGKNQLENVSSESASGSSSVDTYPDFSDEERKKKK 481

Query: 307 LLNYSGGARGXISTDRTRRLLNYGSGACGWTSTDRT*EATKRRRALEKIHRLHE 146
                       S +R+++     S A GW STD + E T+RRR+    +R  E
Sbjct: 482 RPK---------SPNRSKK----DSRAFGWDSTDESDEDTRRRRSGRSQNRSSE 522


>Z81040-2|CAB02782.2|  466|Caenorhabditis elegans Hypothetical
           protein C26E1.2 protein.
          Length = 466

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/68 (32%), Positives = 30/68 (44%)
 Frame = +2

Query: 59  PSWRTCRGTASY*GCVSTRXPHRSSRRNPFVQSVDFLQRSPPLSSFLCPVG*CPTACPTA 238
           PSWR       Y GC++T  P      + F    +  Q  PP+  +  PV   PTA P+A
Sbjct: 291 PSWRASPHFNPYMGCMNT-VPFVPLNTHGFSSHSEHHQNYPPMFHY-SPVTPIPTA-PSA 347

Query: 239 VIEEPPRA 262
            +    RA
Sbjct: 348 ELPSTTRA 355


>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical
           protein C29E6.2 protein.
          Length = 1193

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 378 RTGEAPQLRQWCMRLDISRPDRGGSSTTVAGRAG 277
           +TG   QL +W +RL + + + G S+  +A R+G
Sbjct: 501 QTGAVRQLLEWDIRLLLMKDEMGNSALHLAARSG 534


>AC024876-4|AAU05555.1|  825|Caenorhabditis elegans Hypothetical
           protein Y94H6A.5a protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -2

Query: 315 RGGSSTTVAGRAGXYQQTARGGSSITAVGHAVGHQPTGHRK 193
           RGG+     G  G  +  ARGGSS  A G A G    G+R+
Sbjct: 785 RGGAGGARGGARGGARGGARGGSSRGARGGARGGGKFGNRR 825


>Z81134-7|CAD56602.1|  879|Caenorhabditis elegans Hypothetical
           protein T28D6.5b protein.
          Length = 879

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 278 PARPATVVEEPPLSGRLMSNRMHHCRS 358
           P  P    + PP SG   +N+MHH RS
Sbjct: 841 PPPPGMFPDSPPESGSGSNNQMHHQRS 867


>U23514-4|AAY86231.1|  180|Caenorhabditis elegans Hypothetical
           protein F48E8.8 protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 220 WTSTDRT*EATK--RRRALEKIHRLHEGVSSTRAVGXAGGDAPL 95
           W    R  E  K  RRR  E+I RL E +   RA+  A GD  L
Sbjct: 16  WADGKREEEIDKESRRRRAEQIKRLKERLRKERALREAQGDGDL 59


>AL117202-32|CAD56611.1|  879|Caenorhabditis elegans Hypothetical
           protein T28D6.5b protein.
          Length = 879

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 278 PARPATVVEEPPLSGRLMSNRMHHCRS 358
           P  P    + PP SG   +N+MHH RS
Sbjct: 841 PPPPGMFPDSPPESGSGSNNQMHHQRS 867


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,457,467
Number of Sequences: 27780
Number of extensions: 388406
Number of successful extensions: 971
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)