Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20444
(742 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g71410.1 68414.m08247 protein kinase family protein contains ... 38 0.009
At4g26070.3 68417.m03754 mitogen-activated protein kinase kinase... 30 1.9
At4g26070.2 68417.m03753 mitogen-activated protein kinase kinase... 30 1.9
At4g24800.1 68417.m03552 MA3 domain-containing protein similar t... 29 2.4
At1g19960.1 68414.m02501 expressed protein 29 3.2
At5g45220.1 68418.m05550 Toll-Interleukin-Resistance (TIR) domai... 28 7.5
At4g14740.2 68417.m02267 expressed protein 28 7.5
At4g14740.1 68417.m02266 expressed protein 28 7.5
At1g49960.2 68414.m05605 xanthine/uracil permease family protein... 28 7.5
At1g49960.1 68414.m05606 xanthine/uracil permease family protein... 28 7.5
At5g49900.1 68418.m06179 expressed protein contains Pfam domain ... 27 9.9
At4g04070.1 68417.m00576 hypothetical protein low similarity to ... 27 9.9
At1g24764.1 68414.m03106 expressed protein 27 9.9
At1g13280.1 68414.m01542 allene oxide cyclase family protein sim... 27 9.9
>At1g71410.1 68414.m08247 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 909
Score = 37.5 bits (83), Expect = 0.009
Identities = 26/81 (32%), Positives = 35/81 (43%)
Frame = +2
Query: 17 SRTPCCTACXARSLPSWRTCRGTASY*GCVSTRXPHRSSRRNPFVQSVDFLQRSPPLSSF 196
++ P A A+S P+W G+ S V R + + F +S D Q P + S
Sbjct: 646 TQIPEKVASAAKSSPAWDEDWGSPSKDSAVGNPASSRHNTNDQFNKSTD--QSQPSIMST 703
Query: 197 LCPVG*CPTACPTAVIEEPPR 259
L PT CP IE PPR
Sbjct: 704 LPNKTTAPTTCPAVDIEWPPR 724
>At4g26070.3 68417.m03754 mitogen-activated protein kinase kinase
(MAPKK) (MKK1) (MEK1) identical to MEK1 [Arabidopsis
thaliana] gi|2196704|gb|AAB97145; mitogen-activated
protein kinase kinase (MAPKK) family, PMID:12119167
Length = 354
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 412 VVEEPPPCGRLMSIGAPHHCSLRASCVQ 495
+VE PPPC ++ +P CS + CVQ
Sbjct: 284 IVENPPPCAP-SNLFSPEFCSFISQCVQ 310
>At4g26070.2 68417.m03753 mitogen-activated protein kinase kinase
(MAPKK) (MKK1) (MEK1) identical to MEK1 [Arabidopsis
thaliana] gi|2196704|gb|AAB97145; mitogen-activated
protein kinase kinase (MAPKK) family, PMID:12119167
Length = 354
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 412 VVEEPPPCGRLMSIGAPHHCSLRASCVQ 495
+VE PPPC ++ +P CS + CVQ
Sbjct: 284 IVENPPPCAP-SNLFSPEFCSFISQCVQ 310
>At4g24800.1 68417.m03552 MA3 domain-containing protein similar to
programmed cell death 4 protein [Gallus gallus]
GI:12958564; contains Pfam profile PF02847: MA3 domain
Length = 702
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -3
Query: 440 RPHGGGSSTTVAGRAGKYQRTARGRLLNYGSGACGWTSADRTEEAPQL 297
RP+ G+ T R+ + R A RLL G GW D ++ L
Sbjct: 538 RPNSSGTETVKMARSLIFARHAGERLLRCWGGGSGWAVEDAKDKISNL 585
>At1g19960.1 68414.m02501 expressed protein
Length = 64
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 330 ISRPDRGGSSTTVAGRAGXYQQTARGGSSITAVGHAVGHQP 208
+S P S+TTV G AG GG S + G + G+QP
Sbjct: 1 MSDPSGQSSTTTVGGIAGGSGCNGGGGGSGSGSGGSFGNQP 41
>At5g45220.1 68418.m05550 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 546
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 609 RWDLVILKRARKFTSKANVVAFSILYCLDPASSRRVS 719
+W L+ L K K ++VA I Y LDP++ R +S
Sbjct: 80 KWCLMKLVDINKCAEKDHLVAIPIFYKLDPSTVRGLS 116
>At4g14740.2 68417.m02267 expressed protein
Length = 475
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Frame = -3
Query: 455 PMDINRPHGGGSSTTVAGRAGKYQRTARGRLLNYGS--GACG--WTS-----ADRTEEAP 303
PMD GGSS V G G + G L+ + G C W + RT +
Sbjct: 313 PMDKGLTSTGGSSNNVNGSNGSSSSSHSGELVQQENFLGTCSREWLARGCELLKRTRKG- 371
Query: 302 QLQWRGARVYINRPHE 255
L W+ VYIN+ ++
Sbjct: 372 DLHWKIVSVYINKMNQ 387
>At4g14740.1 68417.m02266 expressed protein
Length = 475
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Frame = -3
Query: 455 PMDINRPHGGGSSTTVAGRAGKYQRTARGRLLNYGS--GACG--WTS-----ADRTEEAP 303
PMD GGSS V G G + G L+ + G C W + RT +
Sbjct: 313 PMDKGLTSTGGSSNNVNGSNGSSSSSHSGELVQQENFLGTCSREWLARGCELLKRTRKG- 371
Query: 302 QLQWRGARVYINRPHE 255
L W+ VYIN+ ++
Sbjct: 372 DLHWKIVSVYINKMNQ 387
>At1g49960.2 68414.m05605 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 398
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 409 WRGARVNINGPHGGGSSTTAVVH---AVGHQPTGQRRLLNYSGG 287
W+G V +NG G + +TA+V +G G RR++ S G
Sbjct: 323 WQGIGVLLNGLFGTATGSTALVENTGLLGLTKVGSRRVVQISAG 366
>At1g49960.1 68414.m05606 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 526
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 409 WRGARVNINGPHGGGSSTTAVVH---AVGHQPTGQRRLLNYSGG 287
W+G V +NG G + +TA+V +G G RR++ S G
Sbjct: 323 WQGIGVLLNGLFGTATGSTALVENTGLLGLTKVGSRRVVQISAG 366
>At5g49900.1 68418.m06179 expressed protein contains Pfam domain
PF04685: Protein of unknown function, DUF608
Length = 957
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 549 AVGGSTSRAFHRSSLEPPRIRWDLVILKRARKFTSKANVVAFSILYC 689
++G S F R L PP+ + V+ + F S+AN +S + C
Sbjct: 103 SIGRSFKGEFQRWQLFPPKCEDEPVLANQFSAFVSRANGKKYSSVLC 149
>At4g04070.1 68417.m00576 hypothetical protein low similarity to
protective antigen [Streptococcus pyogenes] GI:8996050,
fibrinogen-binding protein [Streptococcus equi]
GI:3093478
Length = 728
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 440 RPHGGGSSTTVAGRAGKYQRTARGRLLNYGSGACG 336
R HGGG + V GR+ + R + N G G+ G
Sbjct: 372 RSHGGGRGSRVGGRSSNRSQEVR-QTSNSGGGSAG 405
>At1g24764.1 68414.m03106 expressed protein
Length = 607
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 2 GTSCRSRTPCCTACXARS 55
G+SC + CC AC RS
Sbjct: 581 GSSCNGKRSCCNACGERS 598
>At1g13280.1 68414.m01542 allene oxide cyclase family protein
similar to ERD12 [GI:15320414], allene oxide cyclase
GI:8977961 from [Lycopersicon esculentum]; contains Pfam
profile PF06351: Allene oxide cyclase
Length = 254
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -3
Query: 644 FPRTFQNNQIPSNPRRLQTRA--VKSATGG 561
F R+F N +I SN L TRA S+TGG
Sbjct: 33 FSRSFHNQRISSNSPGLSTRARSTTSSTGG 62
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,896,509
Number of Sequences: 28952
Number of extensions: 376792
Number of successful extensions: 1047
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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